PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676723262
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 365aa    MW: 40206.6 Da    PI: 6.2936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676723262genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-10213261355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  676723262 213 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 261
                58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.53E-11208265No hitNo description
SuperFamilySSF474595.23E-17208277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16211278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-7213261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10216266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGGESNEGDM VLNHGDDESG ISRVGMTAMP LYAKADPFFS SADWDPVVNG GGGFSSSHYS  60
SVAMDNPGMS CFPHYQSGSG SGYPDMPASL LPFGDCGVGG QIGHFLGSDK KGESVGRLIR  120
AGESHDDRHQ VSDDAVLGAS PTRKRRPHEA ESQRNKKAVE EFQQDQRGSD QSQKKHKNDQ  180
SKETMNNKES SQSEEAPKEN YIHMRARRGQ ATNSHSLAER VRREKISERM RLLQELVPGC  240
NKITGKAVML DEIINYVQSL QQQVEFLSMK LATVNPELNI DIDRILAKDL LQSRDRNTPT  300
LGLNHFTSFQ GTIPNISTTT NPQYNPLPQT ALESELQSLY QMGFVSNPST MSSFSPNNGR  360
LKPEL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676723262
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2218060.0AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBankBT0126550.0BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645253.10.0transcription factor bHLH74
SwissprotQ6NKN90.0BH074_ARATH; Transcription factor bHLH74
TrEMBLR0I6X00.0R0I6X0_9BRAS; Uncharacterized protein
STRINGCagra.4395s0200.1.p0.0(Capsella grandiflora)
STRINGXP_006305146.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]