PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676720924

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 325aa MW: 36573.5 Da PI: 9.3848

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676720924	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.4	1.4e-09	159	206	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L+ l+P + +k Ka +L + ++Y++sLq 676720924 159 SHSLAERVRREKISERMKTLQNLVPGC----DKVTGKALMLDEIINYVQSLQ 206 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.49E-10	153	210	No hit	No description
SuperFamily	SSF47459	2.49E-17	153	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.847	155	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-17	155	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.7E-7	159	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-10	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MATFSYFQHY PHSLLDPLLF PTPNSSMKLS GFIDQNPLYS LPNTSTIADT SSIPFLDSYN 60 VEKTESSDVK KLSNTNTTAI TGSSFGDQLS QGTSTTSAVK ELRRKTRNGP KSKEGVEVRK 120 YKKQRNGSSN DIKETRASEQ EAPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKTLQN 180 LVPGCDKVTG KALMLDEIIN YVQSLQNQVE FLSMKLACLS PVVYDFGSDL DGLIVRPEMG 240 STEVGTSFTN AMPTTTPLFS SLLDDPIIPA QPQLRVDFIS CTEEIKSMQT RAEMGICGKG 300 QRQFRWKYVR ETYKRRPLSF VLFTY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676720924

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF428350	1e-125	AF428350.1 Arabidopsis thaliana unknown protein mRNA, complete cds.
GenBank	AY057549	1e-125	AY057549.1 Arabidopsis thaliana probable DNA-binding protein mRNA, complete cds.
GenBank	AY087602	1e-125	AY087602.1 Arabidopsis thaliana clone 36971 mRNA, complete sequence.
GenBank	AY113059	1e-125	AY113059.1 Arabidopsis thaliana At5g50917/At5g50917 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009132684.1	1e-156	PREDICTED: transcription factor bHLH137
Swissprot	Q93W88	1e-131	BH137_ARATH; Transcription factor bHLH137
TrEMBL	M4E1V3	1e-155	M4E1V3_BRARP; Uncharacterized protein
STRING	Bra022753.1-P	1e-156	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8796	24	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-133	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]