PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676720876

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

M-type_MADS

Protein Properties

Length: 379aa MW: 43420.2 Da PI: 7.0418

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676720876	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.8	1.8e-20	13	53	5	45
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + rq t++kRr+gi+KKA+ELS+LCd++v +++fs+ gk 676720876 13 SINARQATYCKRRHGIMKKAKELSILCDIDVVLLMFSPAGK 53 55679*********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.525	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.4E-27	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.77E-22	2	81	No hit	No description
SuperFamily	SSF55455	1.28E-23	2	93	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-15	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-18	15	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-15	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-15	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MGRVKLKIKK LDSINARQAT YCKRRHGIMK KAKELSILCD IDVVLLMFSP AGKPSLCSGK 60 HSIGEVISKF SQLTPQERAK RKLENLEALK KTFMKLDHDV NVSEFLERSY WTEVEKVDSI 120 DDLQQLENSV RQSLYQIHLH KENMLQHQQQ QLMSTECKHQ LQSEIDLDFG IDMEQQLENF 180 SWVRTDENMN VSLKEEDPNL QFYHTYKDMT CSASSSLESY SGLFGKSSDI KKPKLETSGM 240 PGTSADPNQQ FSNLSFLNDP KLQQLAEWNL LGSPADYYVS QILEASYRPQ LGGNWGSSET 300 ITYPVNVFDD PMFSRFYYCG FSFADCSDIF KHAAAKLISS SGKTRSVDPK TRLVLSSRHE 360 NAEEARIDKL QETKKKYNI

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MGRVKLKIKK LDSINARQAT YCKRRHGIMK KAKELSILCD IDVVLLMFSP AGKPSLCSGK  60
HSIGEVISKF SQLTPQERAK RKLENLEALK KTFMKLDHDV NVSEFLERSY WTEVEKVDSI  120
DDLQQLENSV RQSLYQIHLH KENMLQHQQQ QLMSTECKHQ LQSEIDLDFG IDMEQQLENF  180
SWVRTDENMN VSLKEEDPNL QFYHTYKDMT CSASSSLESY SGLFGKSSDI KKPKLETSGM  240
PGTSADPNQQ FSNLSFLNDP KLQQLAEWNL LGSPADYYVS QILEASYRPQ LGGNWGSSET  300
ITYPVNVFDD PMFSRFYYCG FSFADCSDIF KHAAAKLISS SGKTRSVDPK TRLVLSSRHE  360
NAEEARIDKL QETKKKYNI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676720876

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018466350.1	0.0	PREDICTED: agamous-like MADS-box protein AGL30
Swissprot	Q1PFA4	3e-68	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A3P6GCU9	0.0	A0A3P6GCU9_BRAOL; Uncharacterized protein (Fragment)
STRING	Bra004393.1-P	0.0	(Brassica rapa)
STRING	Bo6g109050.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14956	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69540.1	1e-168	AGAMOUS-like 94

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]