PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676720596 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 165aa MW: 18640.6 Da PI: 9.2543 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31.3 | 2.5e-10 | 11 | 49 | 3 | 41 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 i n++ r+ t R+ g++KK E+ +LC+++++ +i+ 676720596 11 IANDTVRKETIKHRKRGLMKKLDEIKILCNVDACAVIYV 49 89********************************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 3.66E-13 | 1 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.881 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.3E-8 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-10 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MARKTLNLAY IANDTVRKET IKHRKRGLMK KLDEIKILCN VDACAVIYVP FNSNSHSEHR 60 KVEKQNTKLI EDNKERSMRE LIFTFLGGNP GTLTLFHLKN VTLNNPHFEI CESSSMAIAA 120 DMAPTAKAEA SSVTLWNASI FNSLQVTKEL QSVILHTMDQ NILIL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676720596 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_180438.2 | 8e-39 | AGAMOUS-like 46 | ||||
TrEMBL | Q7XJ97 | 2e-37 | Q7XJ97_ARATH; Uncharacterized protein | ||||
TrEMBL | Q9SI98 | 2e-38 | Q9SI98_ARATH; Putative MADS-box protein | ||||
STRING | AT2G28700.1 | 3e-38 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28700.1 | 3e-42 | AGAMOUS-like 46 |