PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676720510
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family FAR1
Protein Properties Length: 782aa    MW: 89838.2 Da    PI: 7.639
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676720510genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.12e-2062136189
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                +fYn++A+++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw+++++++eHnHel
  676720510  62 DFYNTFATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDTGKWVLDQIQKEHNHEL 136
                6***************************************876..............589***************************98 PP
2FAR167.63.2e-21222298191
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                +fY++YA+ vGF+vr+ +  +sk +g+it+r+fvCskeg+++++              r+gC a +++k++++g w v++l+++HnH+l p
  676720510 222 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEP 298
                6***************************************9994..............799***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.3E-1662136IPR004330FAR1 DNA binding domain
PfamPF031011.1E-16222298IPR004330FAR1 DNA binding domain
PfamPF105513.0E-25394486IPR018289MULE transposase domain
PROSITE profilePS5096610.249668704IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-8675701IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-8679706IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MDMESADTEP TSLNCGNNMV VKAYPLGMVR LINNNGIAED EGDSGVEPYV GLEFDTAEEA  60
RDFYNTFATR TGFKVRTGQL YRSRTDGTVS SRRFVCSKEG FQLNSRTGCP AFIRVQRRDT  120
GKWVLDQIQK EHNHELGGHM EETTPRPSVQ HRAPAPTKLA ISVPHRPKMK VVDEADKGRS  180
CPSGVISFKR FKGAEESDGQ TQHKATEPYA GLEFGSANEA CQFYQAYAEV VGFRVRIGQL  240
FRSKVDGSIT SRRFVCSKEG FQHPSRMGCG AYMRIKRQDS GGWIVDRLNK DHNHDLEPGK  300
KNAGMKKITE DVTGGLDSVD LIELNDFSNH VDKRRENTIG KEWYPVLLDY FQSKQADDMG  360
FFYAVELDSN GRCMSIFWAD SRSRFACSQF GDAVVFDTSY RKGDYSVPFA MFIGFNHHRQ  420
PVLLGGALVA DESQEAFSWL FQTWLRAMSG RRPRSIVADQ DLPIQQAVAQ VFPGTHHRFS  480
AWQIRSKESE NLRSFPNEFK YEYEKCLYQT QTTVEFDTLW SALVNKYGLR DNMWLREIYE  540
KRENWVPAYL RASFFGGIPV NGTYEPFYGT SLTSLTSLRE FISRYEQGLE QRREEERKED  600
FNSYNLQPFL QTKEPVEEQC RRLYTLTIFR IFQGELAQSY NYIGIKTYEE GAISRFVVKK  660
CTNDTDKHGV TFSASNLNAS CSCQMFEYEG LLCRHILKVF NLLDVRELPS RYILHRWTKN  720
AEFGFVRDVE SGVTSQDLKA LMIWSLREAA SKYIEFGTSS LEKYKLAYEI MREGGKKLCW  780
QR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676720510
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0189070.0AC018907.5 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014852.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
RefseqXP_024014853.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
RefseqXP_024014854.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
RefseqXP_024014855.10.0protein FAR1-RELATED SEQUENCE 7 isoform X1
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLR0HJN80.0R0HJN8_9BRAS; Uncharacterized protein
STRINGBostr.2570s0035.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]