PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676718198
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 321aa    MW: 37840.2 Da    PI: 6.5873
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676718198genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.35.8e-2550132186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W+ +e+++L+ +r+e+++++ ++k++k lWe v++km+++gf rs++qCk+kw+nl +ryk+++++e +     ++++p++++++
  676718198  50 QWSIEETKELLGIREELDQTFMETKRNKLLWEVVAAKMADKGFARSAEQCKSKWKNLVTRYKACETTEPEA---IRQQFPFYNEIQ 132
                7********************************************************************85...56689***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122035.35E-2249111No hitNo description
Gene3DG3DSA:1.10.10.604.6E-450106IPR009057Homeodomain-like
PfamPF138371.2E-2050134No hitNo description
PROSITE profilePS500908.03751107IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDRRNPFHPH HHHHQLHHLI QQQQLPTPPQ STSAAMDPGG GGGGGERIPQ WSIEETKELL  60
GIREELDQTF METKRNKLLW EVVAAKMADK GFARSAEQCK SKWKNLVTRY KACETTEPEA  120
IRQQFPFYNE IQSIFTARMQ RALWSEATEP STSSKRKRHQ FSSDEEEEDE EDVEEPNQGI  180
NEELLSFVET HKKDAEVITT STSTNPRKRA KKGKGITKAE TAGSTLKEIL EDFMRQTVKM  240
ENEWRDAWEM KEREREKKEK EWRRRMAELE EERAAAERRW MEREDERRLR EEARAQKRDT  300
LIDILLNKLS RNHDGDHHQG F
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676718198
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2716770.0AY271677.1 Arabidopsis thaliana transcription factor GT-3a (GT3A) mRNA, complete cds.
GenBankBT0289260.0BT028926.1 Arabidopsis thaliana At5g01380 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475903.11e-157PREDICTED: trihelix transcription factor GT-3a-like
SwissprotQ9SDW01e-148TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A0D3AZB11e-155A0A0D3AZB1_BRAOL; Uncharacterized protein
TrEMBLA0A3P5ZXC61e-155A0A3P5ZXC6_BRAOL; Uncharacterized protein
STRINGBo3g001460.11e-156(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-132Trihelix family protein