PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676717940
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 277aa    MW: 30141.1 Da    PI: 8.4227
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676717940genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0017110132123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C+ksF +   L  H  +H
  676717940 110 YQCKTCDKSFHSFQALGGHRASH 132
                9*********9988888887776 PP
2zf-C2H211.60.00088185207123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+  Fs+   L  H+r+H
  676717940 185 HECSICKAEFSSGQALGGHMRRH 207
                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.0E-12109134IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-9109132No hitNo description
SMARTSM003550.041110132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.554110137IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-9180207No hitNo description
Gene3DG3DSA:3.30.160.605.2E-4182209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-12184209IPR007087Zinc finger, C2H2
SMARTSM003550.031185207IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328185212IPR007087Zinc finger, C2H2
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MTSVHEETRL VLLKGKRTKR QRSASPHMNA EAVSGICSEE RSLDAREERA GEVEFRGATD  60
EDQDMANCLM LLSQGHKAKG SGDHLSTRKI DFLSSKRPVA SLGLGLDGVY QCKTCDKSFH  120
SFQALGGHRA SHKKPKIGAI FLKCDEKKFA SASAVEKVED AGVVGSFLSL QVTSSDGNKK  180
PEKTHECSIC KAEFSSGQAL GGHMRRHRGL TLNANATSTI KAAISSSHHQ ESIRPKNFLE  240
LDLNLPAPED EPKFVFASKD QLLLFAAASN SLIDCHH
Cis-element ? help Back to Top
SourceLink
PlantRegMap676717940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325220.0AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475119.11e-170PREDICTED: zinc finger protein ZAT5-like
RefseqXP_018475984.11e-170PREDICTED: zinc finger protein ZAT5-like
RefseqXP_022553406.11e-170zinc finger protein ZAT5-like
TrEMBLA0A0D3AZK21e-168A0A0D3AZK2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ACN21e-168A0A3P6ACN2_BRAOL; Uncharacterized protein
STRINGBo3g002370.11e-169(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-144C2H2 family protein