PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676716560
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WOX
Protein Properties Length: 350aa    MW: 39771.3 Da    PI: 7.8556
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676716560genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.25e-2275134357
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                +R+++t++ql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  676716560  75 SRWNPTPDQLRALEELYQQgTRTPSADHIQQITAQLrrfgKIEGKNVFYWFQNHKARERQ 134
                7*****************99**************************************97 PP
2Wus_type_Homeobox113.98.3e-3774136365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+Ptp+Q++ Leely++G+rtP++++iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
          676716560  74 SSRWNPTPDQLRALEELYQQGTRTPSADHIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKR 136
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.2E-572139IPR001356Homeobox domain
SuperFamilySSF466893.21E-1274140IPR009057Homeodomain-like
PfamPF000469.3E-2075134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-975134IPR009057Homeodomain-like
CDDcd000862.42E-676136No hitNo description
PROSITE profilePS5007110.99780135IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MWMMGYNEGG ADSFNGGRKL RPLIPRLSSC PTAATNTNSD HRLNMVVTTM TAEQNKRELM  60
MLNSEPQNPP VMVSSRWNPT PDQLRALEEL YQQGTRTPSA DHIQQITAQL RRFGKIEGKN  120
VFYWFQNHKA RERQKRRRQM ENGQDESAFT TASLVSNHGF DKKCSPGYKV DQTKNWICSV  180
GCDTQAEKSR DHHHQEETVS MPMVATKRNG RHGGDDRQSF PARNAMWQMM QLPPGLYASS  240
QNQHHQLNLN STTVSSNLST TYSTVSAAKD TVTVSPLFLR TRTATNTETC DDIKDQEQRE  300
DCLNGELDHQ EQTLELFPLR KEGFCSSGGD GGKEKESGIH YFYEFLPLKN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676716560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135564.10.0PREDICTED: WUSCHEL-related homeobox 1-like isoform X2
RefseqXP_013736499.10.0WUSCHEL-related homeobox 1 isoform X2
SwissprotQ6X7K00.0WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A398A9340.0A0A398A934_BRACM; Uncharacterized protein
STRINGBra001694.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.10.0WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]