PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676715506
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MIKC_MADS
Protein Properties Length: 302aa    MW: 35491.1 Da    PI: 9.2434
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676715506genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.36.5e-31959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtfskRr+g+lKKA+E+SvLCdaev++i+fs++gkl+eyss
  676715506  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVSLIVFSHKGKLFEYSS 59
               79***********************************************96 PP
2K-box101.98.7e-341222177100
      K-box   7 ks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                ks   + + + +++ e+++Lk++ie L+r+qRh+lGedLes+slkeLq+LeqqLe+slk+iR +Kn+l+++++++lq+keke+qeen +L ++++e
  676715506 122 KSpdSHVNAQTNWSMEYSRLKSKIELLERNQRHYLGEDLESISLKELQNLEQQLETSLKHIRFRKNQLMYDSLNHLQRKEKEIQEENSMLAEQIKE 217
                44446777889**********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.366161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-29261IPR002100Transcription factor, MADS-box
CDDcd002651.79E-36276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-30323IPR002100Transcription factor, MADS-box
PfamPF003196.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014867.0E-30126215IPR002487Transcription factor, K-box
PROSITE profilePS5129716.925131221IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRGRVEMKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVSLIVFSH KGKLFEYSSE  60
SWYKETRTKD VTSKYRGSLT SGDQESETQC WATGRCNTSL GVGMEKVLER YERYSYAERQ  120
LKSPDSHVNA QTNWSMEYSR LKSKIELLER NQRHYLGEDL ESISLKELQN LEQQLETSLK  180
HIRFRKNQLM YDSLNHLQRK EKEIQEENSM LAEQIKERES ILKTHQNQWE QHNRSHHIPP  240
QPQPQLHPYM ISHQTSPFLN MGVCVKCGWP IYQGENTTAL KKHSLDLTRE PNYNSNRGCF  300
TA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-18164164MEF2C
5f28_B5e-18164164MEF2C
5f28_C5e-18164164MEF2C
5f28_D5e-18164164MEF2C
6byy_A6e-18164164MEF2 CHIMERA
6byy_B6e-18164164MEF2 CHIMERA
6byy_C6e-18164164MEF2 CHIMERA
6byy_D6e-18164164MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}.
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676715506
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5140451e-180AY514045.1 Brassica rapa var. communis DNA binding protein (CAL) mRNA, complete cds.
GenBankAY5140481e-180AY514048.1 Brassica rapa subsp. rapa DNA binding protein (CAL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109914.11e-149PREDICTED: transcription factor CAULIFLOWER isoform X1
SwissprotQ6R4S31e-150CAL_BRARR; Transcription factor CAULIFLOWER
SwissprotQ6R4S61e-150CAL_BRARC; Transcription factor CAULIFLOWER
TrEMBLA0A397YL701e-148A0A397YL70_BRACM; Uncharacterized protein
TrEMBLM4D3G71e-148M4D3G7_BRARP; Uncharacterized protein
STRINGBra011021.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.11e-121MIKC_MADS family protein