PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676715442
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 532aa    MW: 60056.2 Da    PI: 9.7462
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676715442genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.3e-14231011297
                HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 ++ l +p  f+++h  g  +   kt +l++  s ++W vk+  ++++    +t+GWk+F+ a++L+ gD+ +F++dg++ f  +v++f
  676715442  23 HTH-LNIPVAFFSKHvkG-RNDHIKTAKLRTdASAKTWLVKI--DGSK----FTDGWKDFAVAHDLRIGDITIFRHDGEMVF--HVTAF 101
                444.99**********63.3344467888775888*******..9999....9**********************9999998..88777 PP
2B368.78.2e-22155249398
                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 + +++++l+ +rl+lp +f++++g++k ++k+++l +e+grsW+++++y+k + + + + GW++F+ +ng+k g   +Fkl++ +++ +v++++ 
  676715442 155 VTHVTPSSLRFDRLYLPVSFTRSNGLDKMSGKDIVLLNEKGRSWNLNMKYNKAGMHNFVRPGWRRFCAQNGMKKGHHYTFKLVQ-KSAPPVIRLCG 249
                567788999999**********************************************************************98.88889999986 PP
3B360.13.8e-19271361697
                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                ++s++lk++ l+l kkf++++g++k +s +++l++e+g +W + l++ +   ++ +l+ GW++F++ ng+k+ D+++Fkl++  + ++v++++
  676715442 271 VTSYSLKNDKLYLRKKFVTANGLDKGCS-EIILKNEWGGRWALALKHyESLNNSSYLGPGWRNFCQVNGIKVEDSFMFKLVE-IGDKPVLSLC 361
                68***********************998.****************87544444589***********************987.4555777776 PP
4B347.14.2e-15438530498
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ++++ + k+ +l lp  f++ +g++k++  ++tl  ++g +  v l  +k+ g + ++kGW+eF++a+g+k gD +v++l+++ e ++v+k++ 
  676715442 438 LTLTPKAVKTYILNLPMGFTRVNGINKPG--KITLLRKDGVRQIVDLLQNKSNGIMRIGKGWREFCDAHGIKIGDRFVLELIWEAEDSPVLKFCT 530
                556677777788************99766..7***************76777777*****************************88889999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-199106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1610111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.3511104IPR003340B3 DNA binding domain
CDDcd100175.69E-1413101No hitNo description
SMARTSM010192.4E-2214104IPR003340B3 DNA binding domain
PfamPF023621.5E-82598IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-21147248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-18148248IPR015300DNA-binding pseudobarrel domain
CDDcd100174.75E-16153248No hitNo description
PROSITE profilePS5086314.156153251IPR003340B3 DNA binding domain
SMARTSM010196.5E-25153251IPR003340B3 DNA binding domain
PfamPF023621.5E-20154249IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-16260362IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-16263365IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.056266363IPR003340B3 DNA binding domain
SMARTSM010193.1E-19267364IPR003340B3 DNA binding domain
PfamPF023625.0E-17271362IPR003340B3 DNA binding domain
CDDcd100173.51E-12273361No hitNo description
Gene3DG3DSA:2.40.330.102.0E-16428530IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.871435531IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-17435529IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.2E-17435532IPR003340B3 DNA binding domain
CDDcd100178.14E-13435519No hitNo description
PfamPF023625.1E-14436530IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MADQSLHSPI NSRFFQPLLP GFHTHLNIPV AFFSKHVKGR NDHIKTAKLR TDASAKTWLV  60
KIDGSKFTDG WKDFAVAHDL RIGDITIFRH DGEMVFHVTA FGPSFCHIQY TCASSHNISD  120
DSHDKTNNIG NSSRERLKKN QRTKEDCSSD HSCFVTHVTP SSLRFDRLYL PVSFTRSNGL  180
DKMSGKDIVL LNEKGRSWNL NMKYNKAGMH NFVRPGWRRF CAQNGMKKGH HYTFKLVQKS  240
APPVIRLCGA YSKPPPSVTS QHHHSYYVGS VTSYSLKNDK LYLRKKFVTA NGLDKGCSEI  300
ILKNEWGGRW ALALKHYESL NNSSYLGPGW RNFCQVNGIK VEDSFMFKLV EIGDKPVLSL  360
CTSNHGKAPL EPPEDSDSVN SLSSDSSSGD DSSNSQESEK ESLGDETISQ ECIELERKKN  420
RARCRASSSY SQDQFVRLTL TPKAVKTYIL NLPMGFTRVN GINKPGKITL LRKDGVRQIV  480
DLLQNKSNGI MRIGKGWREF CDAHGIKIGD RFVLELIWEA EDSPVLKFCT KL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676715442
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639399.10.0PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP31e-154REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A0D3CDE60.0A0A0D3CDE6_BRAOL; Uncharacterized protein
STRINGBo5g044960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-155B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]