PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676714754
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 391aa    MW: 43019 Da    PI: 8.3445
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676714754genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.8e-12328373655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR +i +++ +L++l+P+     ++  + a++L +Av+YIk+Lq
  676714754 328 SIAERVRRTKISERMRKLQDLVPNM----DTQTNTADMLDLAVQYIKDLQ 373
                689*********************7....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.072322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-16325387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-11326377No hitNo description
Gene3DG3DSA:4.10.280.103.0E-15327383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-9328373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MESEFQQHHF LLHDHQHQRP RNTGLVRYQS APSSYFSSFG DRESIEDFLD RPTSPETERI  60
LSGFLQTTDT SNNVDSFLHH TFSRQNSGGT EKKPLEVKTE EEVVVDIPAM EVVGGGGGEV  120
GSVGQESVGY ASVVQSLTRN NKRPREKDDR TPVNNLARHN SSPAGLFSSI DVETAYAAVM  180
KSMGGFGGGN VMNMSHSNTE AASSLTTTTP RSKLPLPLVS RPMSTIPETP DVKPSFSSRL  240
PPRTLSGGFN RSFGNEGSAS TKLTAIARTQ SGGLDQYKTK DEDSASRRPP LAHHMSLPKS  300
LSDIEQLLSD SIPCKIRAKR GCATHPRSIA ERVRRTKISE RMRKLQDLVP NMDTQTNTAD  360
MLDLAVQYIK DLQEQVKGLE ETRARCRCSS A
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676714754
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869674.10.0transcription factor bHLH122
SwissprotQ9C6900.0BH122_ARATH; Transcription factor bHLH122
TrEMBLA0A1J3ES910.0A0A1J3ES91_NOCCA; Uncharacterized protein (Fragment)
TrEMBLA0A1J3H6A20.0A0A1J3H6A2_NOCCA; Uncharacterized protein
STRINGfgenesh2_kg.1__4183__AT1G51140.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105472632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.10.0bHLH family protein
Publications ? help Back to Top
  1. Yang Z, et al.
    Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.
    Mol. Cell Proteomics, 2013. 12(12): p. 3559-82
    [PMID:24043427]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Takahashi Y,Kinoshita T,Matsumoto M,Shimazaki K
    Inhibition of the Arabidopsis bHLH transcription factor by monomerization through abscisic acid-induced phosphorylation.
    Plant J., 2016. 87(6): p. 559-67
    [PMID:27227462]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  5. Takahashi Y,Ebisu Y,Shimazaki KI
    Reconstitution of Abscisic Acid Signaling from the Receptor to DNA via bHLH Transcription Factors.
    Plant Physiol., 2017. 174(2): p. 815-822
    [PMID:28438792]