PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676713052 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 296aa MW: 33860.6 Da PI: 4.4945 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.5 | 3.6e-06 | 192 | 230 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L A+eYIk Lq 676713052 192 RKEKLGDRITALQQLVSPF-----GKTDTASVLHDAIEYIKFLQ 230 677888999*******998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.909 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.29E-11 | 190 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.58E-6 | 190 | 234 | No hit | No description |
SMART | SM00353 | 0.0072 | 191 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-9 | 194 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MKEEFKTTED CTGTWWSLPE GMFSDCSLPR STEISIDIGG FEWQNIDNLD ANTYNNSHCS 60 TLVSNTNLDS TSQIYVWNQY DHPEEERLDP INSFLKGLFD SSEQLSVPSV KPELLESFHF 120 FDDVFLDESR TVSVFDHVIG DKREQDIQAW KSLLTCERAR EKTEDLEDIE SLPPLKRPRL 180 ETPSQFPSFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH DAIEYIKFLQ TQISASSIPH 240 LNCRGYGEQK QCLDKNTHDE DCSARQDLRS RGLCLMPISS TFSTSPPHLD TSSFWN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676713052 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF032299 | 1e-134 | KF032299.1 Sisymbrium irio self-incompatibility gene locus, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013653898.1 | 1e-166 | transcription factor bHLH103-like | ||||
Refseq | XP_013669203.1 | 1e-166 | transcription factor bHLH103-like | ||||
Swissprot | Q8VZ22 | 1e-144 | BH103_ARATH; Transcription factor bHLH103 | ||||
TrEMBL | R9S9W6 | 0.0 | R9S9W6_SISIR; Putative transcription factor bHLH103 | ||||
STRING | Bra013520.1-P | 1e-165 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14712 | 14 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21340.1 | 1e-146 | bHLH family protein |
Publications ? help Back to Top | |||
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