PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676712786
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 438aa    MW: 50265.5 Da    PI: 6.5655
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676712786genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.75.6e-27115209185
   trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                +Wt+++v++Li+a+++++++++ ++         +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d++
  676712786 115 KWTDKMVKLLITAVSYIGDDSSMDSgsrrkfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDSI 209
                7**************9888888665556778888**********************************************669999998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-24113236No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDGSFPQGGV VRGGASSYGG FDLQGGSMRV HHQDSMNHHR HNPNSRPLHE GIPFTMVTGQ  60
TCDHHNNMSM AEQHKGEREK NSVSDDDEPS FNEEGGDGHN EANKSAKGSP WQRVKWTDKM  120
VKLLITAVSY IGDDSSMDSG SRRKFAVLQK KGKWKSVSKV MAERGYHVSP QQCEDKFNDL  180
NKRYKKLNDM LGRGTSCQVV ENPALLDSIG YLNDKEKDDV RKIMSSKHLF YEEMCSYHNG  240
NRLHLPHDHA LQRSLQLALR NRDDHDNDDS RKHQVEDLDD EDHDGEGDEH DEYEEHHYSH  300
GDCRVVHYGG GPLKKARQSH SHEDVDHPSH VNSLECNKVS LAQLPFPHAD GSHGGAESGR  360
AAAMQKQWIE SRTLQLEEQK LQIQVELLEL EKQRFRWQRF SKKRDQELER MRMENERLKL  420
ENDRMGLELK QRELGVEL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676712786
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0458500.0AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankAY0913780.0AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16F40.0AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307528.10.0uncharacterized protein LOC17897295
TrEMBLR0GX820.0R0GX82_9BRAS; Uncharacterized protein
STRINGCagra.1632s0015.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.10.0sequence-specific DNA binding transcription factors