PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676710750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | WOX | ||||||||
Protein Properties | Length: 316aa MW: 35099.5 Da PI: 5.3866 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.2 | 2.4e-17 | 51 | 111 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ +l ++ +++V++WFqNr+ + k+ 676710750 51 KPRWNPKPEQIRILESIFNSgIVNPPRDEIQRIRIRLqeygQIGDANVFYWFQNRKSRAKH 111 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 111.1 | 6e-36 | 50 | 112 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++eiqri+ +L+eyG+i+d+NVfyWFQNrk+R ++k 676710750 50 PKPRWNPKPEQIRILESIFNSGIVNPPRDEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKHK 112 579**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.977 | 47 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-6 | 49 | 116 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.03E-11 | 49 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.08E-7 | 50 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 51 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.0E-15 | 51 | 111 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MSSNKNWPSM FKSKPCNNHR NHRDIDTPSY MHYPNCNISS PFSSDRVPDP KPRWNPKPEQ 60 IRILESIFNS GIVNPPRDEI QRIRIRLQEY GQIGDANVFY WFQNRKSRAK HKLRVLQKNP 120 KMSGCNPNRT RKDRIITPSN VTEPCFGLVN QEDGLFPAQN NDLVITEPAG FIFPVDNVPN 180 VTQSGFGFGD FVVPVVTEEV MELSAVNNGV PEINFDGGGN GYFSSSVPFT VPSTIDLSQG 240 NVILSGGGDT GDGVSPVSMT VFINDMPFEV AAGLFNVKEA FGNEAMLINS FGQPILTDEF 300 GVTFQPLQNG AVYYLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor, which may be involved in embryonic patterning (PubMed:14711878). May be required for basal embryo development after fertilization (PubMed:14711878). Acts partially redundantly with STIP in promoting embryonic cell division and proliferation (PubMed:17706632). Promotes cotyledon boundary formation by maintaining the symmetry in CUC genes expression domains (PubMed:22827849). {ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:22827849, ECO:0000303|PubMed:14711878}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676710750 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2 (PubMed:21316593). Up-regulated by CLE8 (PubMed:22427333). {ECO:0000269|PubMed:21316593, ECO:0000269|PubMed:22427333}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY251400 | 1e-110 | AY251400.1 Arabidopsis thaliana WOX8 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619706.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 8 isoform X1 | ||||
Swissprot | Q6X7J5 | 1e-160 | WOX8_ARATH; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A3P6DD03 | 0.0 | A0A3P6DD03_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g127670.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14262 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45980.1 | 1e-151 | WUSCHEL related homeobox 8 |
Publications ? help Back to Top | |||
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