PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676710090
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 519aa    MW: 58655.8 Da    PI: 6.1276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676710090genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-10315355954
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                Er RR +  ++f+ L+ l+P++     +K++ a+i+ +A++YIk+L
  676710090 315 ERERRVHFSDRFFDLKNLIPNP-----TKNDRASIVGEAIDYIKEL 355
                9*********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.04306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-7312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7314355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-10314367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-12314369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.87E-9315360No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MKRVEKEIAK GDKRLVGESI SRLPIREVTH GTHIPQRRHR IWLIMTEMPQ ERESIYEEMG  60
CFDPNTPAEV TVESSFSQAG PPQQPPPQIL VAGSTSNSNC SADVEELPEF HLSPQDCPQA  120
SSTPLQQFHI NPLAPCDNQF QNNNISLIHQ MAYDQQQQQQ QHSSWDNGYQ DFVNMGANNA  180
TTPDLLSLLH LPRCSLPPPP HSMLPNSSIS FSDIMSSSSA AAVMYDPLFH LNFPLQTRDQ  240
NHQRNGSCLL GVEDQIQIDA NGGGINMMYY EGGNNIDNNN NNNNDGGFDN GILEFRNGGK  300
RKGRGSGMSR TFPTERERRV HFSDRFFDLK NLIPNPTKND RASIVGEAID YIKELLRTIE  360
DLKMLVEKKK FGKFRSKKKA RVGGEEDQEQ EEDTVNYRTQ SEVDQSCFNK NNNNKSLRCS  420
WLKRKSKVTE VDVRIIDDEV TIKLVQKKKI NCLLFTTKVL DQLQLDLHHV AGGQIGEHYS  480
FLFNTKICEG SCVYASGIAD TVMEVVEKQY MEAVPTNGY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676710090
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2516950.0AF251695.1 Arabidopsis thaliana putative transcription factor BHLH10 mRNA, complete cds.
GenBankAK2285920.0AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBankBT0057110.0BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBankBT0086080.0BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024003913.10.0transcription factor bHLH10
SwissprotQ84TK10.0BH010_ARATH; Transcription factor bHLH10
TrEMBLV4M9D80.0V4M9D8_EUTSA; Uncharacterized protein
STRINGXP_006410254.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]