PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676710062 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 519aa MW: 58655.8 Da PI: 6.1276 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.8 | 2.6e-10 | 315 | 355 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR + ++f+ L+ l+P++ +K++ a+i+ +A++YIk+L 676710062 315 ERERRVHFSDRFFDLKNLIPNP-----TKNDRASIVGEAIDYIKEL 355 9*********************.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.04 | 306 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-7 | 312 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-7 | 314 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-10 | 314 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-12 | 314 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.87E-9 | 315 | 360 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MKRVEKEIAK GDKRLVGESI SRLPIREVTH GTHIPQRRHR IWLIMTEMPQ ERESIYEEMG 60 CFDPNTPAEV TVESSFSQAG PPQQPPPQIL VAGSTSNSNC SADVEELPEF HLSPQDCPQA 120 SSTPLQQFHI NPLAPCDNQF QNNNISLIHQ MAYDQQQQQQ QHSSWDNGYQ DFVNMGANNA 180 TTPDLLSLLH LPRCSLPPPP HSMLPNSSIS FSDIMSSSSA AAVMYDPLFH LNFPLQTRDQ 240 NHQRNGSCLL GVEDQIQIDA NGGGINMMYY EGGNNIDNNN NNNNDGGFDN GILEFRNGGK 300 RKGRGSGMSR TFPTERERRV HFSDRFFDLK NLIPNPTKND RASIVGEAID YIKELLRTIE 360 DLKMLVEKKK FGKFRSKKKA RVGGEEDQEQ EEDTVNYRTQ SEVDQSCFNK NNNNKSLRCS 420 WLKRKSKVTE VDVRIIDDEV TIKLVQKKKI NCLLFTTKVL DQLQLDLHHV AGGQIGEHYS 480 FLFNTKICEG SCVYASGIAD TVMEVVEKQY MEAVPTNGY |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00285 | DAP | Transfer from AT2G31220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676710062 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF251695 | 0.0 | AF251695.1 Arabidopsis thaliana putative transcription factor BHLH10 mRNA, complete cds. | |||
GenBank | AK228592 | 0.0 | AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03. | |||
GenBank | BT005711 | 0.0 | BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds. | |||
GenBank | BT008608 | 0.0 | BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024003913.1 | 0.0 | transcription factor bHLH10 | ||||
Swissprot | Q84TK1 | 0.0 | BH010_ARATH; Transcription factor bHLH10 | ||||
TrEMBL | V4M9D8 | 0.0 | V4M9D8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410254.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1355 | 26 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31220.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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