PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676708338

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

C2H2

Protein Properties

Length: 323aa MW: 36774.5 Da PI: 8.4127

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676708338	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9.3e-06	165	184	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ 676708338 165 FSCHVCFKTFNRYNNLQMHM 184 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.13E-5	146	187	No hit	No description
PROSITE profile	PS50157	10.055	165	192	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.8E-4	165	184	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	167	187	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.44E-5	234	269	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MKSLNKHSQM ISSLSNHCSP YSMESPQYEI SLSSSSEKPK DHFQSFDLYR DLTQNPSNNN 60 TLIEPLPLID RINLNPSLNL RPKPSYVEEE DDDGEEDEDN AAVDVSLHIG LPGSGYSSND 120 AKQPKKKNGK EIVTYDARKN IENEVSGKAY WIPAVEQIII GFTHFSCHVC FKTFNRYNNL 180 QMHMWGHGSQ YRKGPESLKG TQPRAMLGIP CYCCVEGCKN HIDHPRSKPL KDFRTLQTHY 240 KRKHGQKPYS CRMCGKLLAV KGDWRTHEKN CGKRWVCVCG SDFKHKRSLK DHVKAFGPGH 300 GPYPTGMFDE QPSYSSVSET LFI

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676708338

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006397425.2	1e-178	protein TRANSPARENT TESTA 1
Swissprot	Q8VWG3	1e-177	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	Q700E7	1e-176	Q700E7_ARATH; At1g34790
STRING	Bostr.1040s0072.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-179	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]