PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676708044

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 387aa MW: 43561.6 Da PI: 7.9307

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676708044	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	199	245	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++N+++ L llP + kK +Ka++Le A++++k Lq 676708044 199 EHVLAERKRRQKLNERLIALSALLPGL-----KKADKATVLEDAIKHLKLLQ 245 5889*********************.....9**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.19E-15	195	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.205	195	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.9E-15	199	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-9	199	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.84E-11	200	249	No hit	No description
SMART	SM00353	1.5E-12	201	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007029	Biological Process	endoplasmic reticulum organization
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MVNLCVSGAL LNGDIINPRH YCYPNRYLHE HCEAASSQNH YKEFTPPHSH NKPNTHTDSL 60 KNKQKHMEDS SFTDLMLDTD EYLIDDWESD FPLVQGETME MDHQNTKPVS ESESVSGFML 120 IPDRPTKQLK VNSTSSSPSS SSSSGSLTTP QVISFGSPVP KMNVVETSFN FSNQGKMDQN 180 VGSKRKDHGG KREPHLLKEH VLAERKRRQK LNERLIALSA LLPGLKKADK ATVLEDAIKH 240 LKLLQERVKK LEEERVGTKR MDQSVILVKR SQVYVEDDSS SYSSTCSAAS TPSSSLEDVS 300 ILKQTMPMIE ARVSDRDLLI RIHCEKNKGC LIKILSSLEK FRLEVVNSFT LPFGHSTLVI 360 TILAKMDNKF SRPIEDVVKN IRLALAE

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MVNLCVSGAL LNGDIINPRH YCYPNRYLHE HCEAASSQNH YKEFTPPHSH NKPNTHTDSL  60
KNKQKHMEDS SFTDLMLDTD EYLIDDWESD FPLVQGETME MDHQNTKPVS ESESVSGFML  120
IPDRPTKQLK VNSTSSSPSS SSSSGSLTTP QVISFGSPVP KMNVVETSFN FSNQGKMDQN  180
VGSKRKDHGG KREPHLLKEH VLAERKRRQK LNERLIALSA LLPGLKKADK ATVLEDAIKH  240
LKLLQERVKK LEEERVGTKR MDQSVILVKR SQVYVEDDSS SYSSTCSAAS TPSSSLEDVS  300
ILKQTMPMIE ARVSDRDLLI RIHCEKNKGC LIKILSSLEK FRLEVVNSFT LPFGHSTLVI  360
TILAKMDNKF SRPIEDVVKN IRLALAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	208	ERKRRQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that regulates the expression of at least NAI2, PYK10 and PBP1. Required for and mediates the formation of endoplasmic reticulum bodies (ER bodies). Involved in the symbiotic interactions with the endophytes of the Sebacinaceae fungus family, such as Piriformospora indica and Sebacina. {ECO:0000269\|PubMed:12581307, ECO:0000269\|PubMed:15155889, ECO:0000269\|PubMed:15919674, ECO:0000269\|PubMed:18248598, ECO:0000269\|PubMed:18467340, ECO:0000269\|PubMed:18780803}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676708044

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018440234.1	0.0	PREDICTED: transcription factor NAI1-like
Swissprot	Q8S3F1	1e-155	BH020_ARATH; Transcription factor NAI1
TrEMBL	A0A078IRX0	1e-179	A0A078IRX0_BRANA; BnaC08g49160D protein
TrEMBL	A0A0D3DVY6	1e-179	A0A0D3DVY6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FK39	1e-179	A0A3P6FK39_BRAOL; Uncharacterized protein
STRING	Bo8g100870.1	1e-180	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13607	17	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22770.1	1e-154	bHLH family protein

Publications ? help Back to Top
Hakenjos JP, et al. ML3 is a NEDD8- and ubiquitin-modified protein. Plant Physiol., 2013. 163(1): p. 135-49 [PMID:23903439] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yoshii M,Yamamoto A,Kagaya Y,Takeda S,Hattori T The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10, a seedling-specific gene upon embryonic-to-postgerminative developmental phase transition. Plant Signal Behav, 2015. 10(12): p. e1105418 [PMID:26479492]