PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676707612
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26432.4 Da    PI: 10.4019
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676707612genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.37e-171564150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krie +  r vtfskRr gi  K +E+SvLC+++v  +i+s  gk y++ 
  676707612 15 KRIEKNEDRMVTFSKRRSGIYTKLSEISVLCGVDVGFLIYSGAGKPYTFG 64
               79**********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.128767IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-21766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-23885IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-16929IPR002100Transcription factor, MADS-box
PfamPF003198.0E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MKVKKTKGKQ KIDIKRIEKN EDRMVTFSKR RSGIYTKLSE ISVLCGVDVG FLIYSGAGKP  60
YTFGSPSFDA VAQRFLERFH HRQTMHGEGS SMPSSSSMIV DAHTKVRMDE LCRNLSNLME  120
QTHAEEEKCK KPESAYEPSL PKVAPKDEEE AQSEQSIIQT TPHRTSTFLD NLVKNVGKRQ  180
IGKPKRKTIK TRAKWQRKLE DCGVFVNHDK CMKGRKKLTA SLASRLHGFS VEG
Cis-element ? help Back to Top
SourceLink
PlantRegMap676707612
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639481.11e-67PREDICTED: agamous-like MADS-box protein AGL62
RefseqXP_022569565.11e-67agamous-like MADS-box protein AGL29
TrEMBLA0A397XXX97e-67A0A397XXX9_BRACM; Uncharacterized protein
STRINGBo5g061120.14e-67(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.17e-35AGAMOUS-like 64