PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676707074
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 358aa    MW: 39862.7 Da    PI: 4.7578
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676707074genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.5e-31175233259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+geH+h+
  676707074 175 SDMWAWRKYGQKPIKGSPYPRNYYRCSSSkGCLARKQVERSNLDPNIFIVTYTGEHTHP 233
                79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-31161235IPR003657WRKY domain
SuperFamilySSF1182904.45E-27167235IPR003657WRKY domain
PROSITE profilePS5081133.281169235IPR003657WRKY domain
SMARTSM007746.1E-39174234IPR003657WRKY domain
PfamPF031063.1E-26176233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSEDWDLFAV VRSCSSSVST ATINTNDGDC KQHQDPPPPL FTHVDEDRVR ESSSCNELQD  60
SCKPFLPVTT SWSSSSSPPL LPPPPPPVVS SAATSLLMKQ EQRLIESSQD QKPPLGVRVF  120
PPPTTISSSS SSVFVFRGQR DQLLQQQSQA PLRSRKRKNQ QKRTICHVTQ ENLSSDMWAW  180
RKYGQKPIKG SPYPRNYYRC SSSKGCLARK QVERSNLDPN IFIVTYTGEH THPRPTHRNS  240
LAGSTRNKSQ HFNPTPKPDH SSGQTVPGTN NVKEEIHLSP TTPLKENDDV QGANGDEEVN  300
MEDEELDEVV EEEEEEDDED DDVDDLLIPN FAVRDRDDLF FAGNFPSWSA GSAGEGGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-201762361880Disease resistance protein RRS1
5w3x_D6e-201762361880Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676707074
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127213.11e-162PREDICTED: probable WRKY transcription factor 27
RefseqXP_013687742.11e-162probable WRKY transcription factor 27
SwissprotQ9FLX81e-135WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLA0A1J3E2740.0A0A1J3E274_NOCCA; Putative WRKY transcription factor 27
STRINGBra022612.1-P1e-161(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-119WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mukhtar MS,Liu X,Somssich IE
    Elucidating the role of WRKY27 in male sterility in Arabidopsis.
    Plant Signal Behav, 2017. 12(9): p. e1363945
    [PMID:28816593]