PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676706988
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 443aa    MW: 48860.5 Da    PI: 9.05
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676706988genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.7e-08125144626
                -SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                C+f+   G Ck Gd+C+F H+
  676706988 125 CKFWKT-GNCKKGDQCPFLHS 144
                9*9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.5E-6118144IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.732119146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7119144IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5124144IPR000571Zinc finger, CCCH-type
SMARTSM003202.7E-4150189IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.104.0E-42152438IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509784.88E-42152198IPR017986WD40-repeat-containing domain
PROSITE profilePS5029418.853157361IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.984157198IPR001680WD40 repeat
PfamPF117157.5E-6172206No hitNo description
PROSITE patternPS006780176190IPR019775WD40 repeat, conserved site
PRINTSPR003203.1E-8176190IPR020472G-protein beta WD-40 repeat
SMARTSM0032053229266IPR001680WD40 repeat
SuperFamilySSF509784.88E-42236439IPR017986WD40-repeat-containing domain
SMARTSM003200.0012274312IPR001680WD40 repeat
PfamPF004004.6E-5277312IPR001680WD40 repeat
PROSITE profilePS5008210.475296321IPR001680WD40 repeat
PRINTSPR003203.1E-8299313IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780299313IPR019775WD40 repeat, conserved site
SMARTSM003207.4E-5315352IPR001680WD40 repeat
PfamPF004000.0034317351IPR001680WD40 repeat
PROSITE profilePS500829.205322361IPR001680WD40 repeat
PRINTSPR003203.1E-8339353IPR020472G-protein beta WD-40 repeat
SMARTSM0032060402437IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDEATTARST LCMSYKAPRR YSNGRNFGVE RQQGFAADIV TRRPYAPYDS RMNRGPNKWS  60
RNLVWTASEG NRPRNNENTY GSAKPQAPIK QRKNAVYEQR STSVSDTRVC GWKDKFSPKS  120
KEWVCKFWKT GNCKKGDQCP FLHSWTCLPG MVMLAALEGH KKDLKGIALP QGSDKLFSAS  180
SDGTLRIWDC HTGQCVHTIN LQAEAGSLMS EGPWVFLGLP NAVKAFNVQT SKDLHLDGVV  240
GQVHAMTVGS GMLFAGTSSG TISVWKVTDK ESDPFTYLKS LEGHHCGEVT CFIVGGQRLY  300
SGSVDKTIKV WDLNTLECTM TLRQHTATVT SLLCWDQYLI SSSLDGTIKV WGSSENGSLK  360
VTNTRRQEQS VHTLSGMSDA EGKPIIFCSY QNGTVSICDL PSFEERGKMF STIGTIAIGP  420
EGLLFTGEKT GKLRVWNLAG TKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-181544388323Tako8
6g6n_A1e-181544388323Tako8
6g6n_B1e-181544388323Tako8
6g6n_C1e-181544388323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676706988
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485362.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like isoform X2
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A0D3C0570.0A0A0D3C057_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C0F60.0A0A3P6C0F6_BRAOL; Uncharacterized protein (Fragment)
STRINGBo4g140040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein