PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676705534 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 29092.2 Da PI: 8.066 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.7 | 4.8e-09 | 90 | 139 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+r h ++Er RR++ ++++ L ++lP + +K++K +i+ kAv+ I +L+ 676705534 90 RCRRHMMNERTRREKQKQSYLALHSVLPFD-----TKNDKNSIVGKAVDQIEKLE 139 6788*************************9.....9***************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-11 | 82 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.85E-8 | 87 | 143 | No hit | No description |
PROSITE profile | PS50888 | 12.316 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-6 | 90 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-7 | 93 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-6 | 95 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDNFFLDSVC QEEEDKFWDL IPGDISGYGD DDDDKTPSVL NRSAFRSYVK DMEPRMVTSS 60 STVNVKSRMV NLLRKNWEEK KKAAVPEKER CRRHMMNERT RREKQKQSYL ALHSVLPFDT 120 KNDKNSIVGK AVDQIEKLEG LKKELQRRMN TLEAKSVNNH DEMSGTKIRF SLQEPLSGVD 180 SMVEILQCLK LMGTKVKTVQ ATFSPHEFST TMKIETTQVR EEVEKRVERR LQETEWKLLF 240 LPEASFFKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676705534 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006403210.1 | 1e-132 | transcription factor bHLH92 | ||||
Swissprot | Q9FIX5 | 1e-116 | BH092_ARATH; Transcription factor bHLH92 | ||||
TrEMBL | V4LXN5 | 1e-130 | V4LXN5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006403210.1 | 1e-131 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9602 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 1e-102 | bHLH family protein |
Publications ? help Back to Top | |||
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