PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676704342
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NF-YC
Protein Properties Length: 124aa    MW: 14002 Da    PI: 6.1295
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676704342genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC97.21.3e-301376871
      NF-YC  8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkr 71
                q+e ++dfk h+l larikki+k+  dv+misaeaP++++kace+f ++lt rswlhaee k 
  676704342 13 PQMEAVKDFKSHQLTLARIKKIMKSKHDVRMISAEAPIVFAKACEMFPVDLTTRSWLHAEEDKH 76
               48**********************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.11E-19279IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.8E-251785IPR009072Histone-fold
PfamPF008081.1E-112684IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MDHNDNICNH QPPQMEAVKD FKSHQLTLAR IKKIMKSKHD VRMISAEAPI VFAKACEMFP  60
VDLTTRSWLH AEEDKHCYVA VPHLDGGVQY YYPPVIDGSG MYALQQQVWP SCWPVASCGG  120
DGED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B6e-251176368NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676704342
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402087.11e-43nuclear transcription factor Y subunit C-6
SwissprotQ9FGP75e-34NFYC6_ARATH; Nuclear transcription factor Y subunit C-6
TrEMBLV4KZY03e-42V4KZY0_EUTSA; Uncharacterized protein
STRINGXP_006402087.16e-43(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50480.12e-36nuclear factor Y, subunit C6
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]