PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676703602
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 240aa    MW: 26736 Da    PI: 9.7485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676703602genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18111162156
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                ++++GVr++  +g+WvAeIr+p   g +  r +lg+f t +eAa a+++a+k+++g+
  676703602 111 CHFRGVRQRT-WGKWVAEIREP---G-HgSRLWLGTFPTSYEAALAYDEAAKAMYGH 162
                689****999.**********8...4.36*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-14111162IPR001471AP2/ERF domain
CDDcd000183.10E-28111170No hitNo description
Gene3DG3DSA:3.30.730.101.0E-28112170IPR001471AP2/ERF domain
SMARTSM003801.4E-35112175IPR001471AP2/ERF domain
PROSITE profilePS5103220.429112169IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-20112170IPR016177DNA-binding domain
PRINTSPR003673.7E-9113124IPR001471AP2/ERF domain
PRINTSPR003673.7E-9135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDQSQSILIR REWHKRNYVE TVRSIGIIVS FASSFRVLSY MPSKIVDRKR KSRDGATSVA  60
ETLKKWREYN EQTEAASCND DDGLKPIRRA PPKGSRKGRM KGKGGPENRI CHFRGVRQRT  120
WGKWVAEIRE PGHGSRLWLG TFPTSYEAAL AYDEAAKAMY GHLARLNLPD ISNGSSSTVA  180
TVSGSVTTLS DESEVCALED THVRSGSCQN FDHEIQRKLG HMSCYSSFSS SPSSLLSGES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-17112169260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676703602
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481559.15e-92PREDICTED: dehydration-responsive element-binding protein 2C
SwissprotQ8LFR22e-80DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A0D3C5D92e-84A0A0D3C5D9_BRAOL; Uncharacterized protein
STRINGBostr.23794s0027.1.p7e-88(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-49ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]