PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676702724
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 329aa    MW: 37045.1 Da    PI: 6.7625
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676702724genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.32.1e-216016827128
        NAM  27 k.leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy......kgrapkgek 118
                  le  + i++v+i+++eP dLp  +k  +++ wyf s+ +k   + +r++rat++g Wk tg+d +v++ +g+ +g+kk Lvf       + ++ + +k
  676702724  60 AdLESRNQINDVNICQYEPVDLPGLAKIeSSNTWYFISPVEKF-GRLNRRKRATRTGNWKITGNDSKVKDIDGNPIGVKKFLVFQenkrfsTSSTIQQNK 158
                23555567***************54444135578888777665.678999***********************************544443344555669 PP

        NAM 119 tdWvmheyrl 128
                 +W++he++ 
  676702724 159 PHWIIHEFHS 168
                9*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.18633186IPR003441NAC domain
SuperFamilySSF1019412.62E-2665186IPR003441NAC domain
PfamPF023651.8E-978167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGQVKVIHVP SSLQYADIFT KGLPTSLFNE FKTSLTVRSA DTSTEGGGIH HLSKITGNVA  60
DLESRNQIND VNICQYEPVD LPGLAKIESS NTWYFISPVE KFGRLNRRKR ATRTGNWKIT  120
GNDSKVKDID GNPIGVKKFL VFQENKRFST SSTIQQNKPH WIIHEFHSSL NHRNKGDFVL  180
CKLMKKTRNR RSSATVNVSP AAIDLSPTLT LSDSALSHSQ NVNTEDNYGG DYDSTRLEVF  240
PEFQSSISHW LDHSHDVEHF YGGGFYDTTQ SWEECEIHGL SVQEAGHVYG HNMIHNSKTL  300
EASPQQLEVG NNSEAAVVDL FNYQMHYDI
Cis-element ? help Back to Top
SourceLink
PlantRegMap676702724
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018511050.13e-88PREDICTED: NAC domain-containing protein 62 isoform X1
TrEMBLA0A3P6F2481e-71A0A3P6F248_BRAOL; Uncharacterized protein
STRINGBo5g002870.12e-72(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04430.15e-47NAC domain containing protein 49