PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676702412 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MYB_related | ||||||||
Protein Properties | Length: 248aa MW: 27710 Da PI: 4.7328 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.9e-17 | 31 | 75 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+e +++ + +lG++ W++Ia+ m +Rt++++k++w++ 676702412 31 RGKFTPQEEEDIIKFHSLLGNR-WAAIAKQMA-NRTDNDIKNHWNSC 75 89********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.124 | 1 | 25 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-11 | 11 | 36 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.65E-21 | 11 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.221 | 26 | 80 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-15 | 30 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 31 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.92E-11 | 33 | 73 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-20 | 37 | 80 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MFVSNCAKGL QRCGKSCRLR WLNYLRPGIK RGKFTPQEEE DIIKFHSLLG NRWAAIAKQM 60 ANRTDNDIKN HWNSCLKKRL VRSGIDPMTH EPAVSVVKAS SYSTTSSPTP TPSSSSSTSS 120 SFSSTGSARL LNKLAAGISS RQHGLDRIKT VILSEPRQAV EEDEMMIISK EGEEEEEGEE 180 MIGCSMEVDE NLISTTSFDE YLTCDFSPTT TTSFVAAFDD CSLIEPYDLY QSDFYHETGD 240 DQLDLFLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-19 | 6 | 80 | 33 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676702412 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by herbivory. {ECO:0000269|PubMed:23943862}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF738285 | 1e-173 | KF738285.1 Brassica napus MYB transcription factor 95 (MYB95.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018442914.1 | 1e-133 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | O64399 | 5e-41 | MYB34_ARATH; Transcription factor MYB34 | ||||
TrEMBL | M4DHD4 | 1e-128 | M4DHD4_BRARP; Uncharacterized protein | ||||
STRING | Bra015911.1-P | 1e-129 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74430.1 | 3e-81 | myb domain protein 95 |