PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676700848
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 146aa    MW: 16918.2 Da    PI: 4.3082
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676700848genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.5e-1015107399
                EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                k l+p  + ks ++ ++p +f+++ ++  + + ++++  +++ sW++ l  +  +++ +++++ W+eF ++n L   D++vF ++ ++ f   v++f+k
  676700848  15 KSLSPGKNWKSkSMRIIPEEFLRSTSE--TIEHMVVFSVRWNSSWQLWL--QPDKEGlFMIEEDWEEFLDDNLLGPADILVFIYQYTMFF--EVRIFNK 107
                55555555555255699*****99964..46679***************..8888888*************************9877888..8888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100178.97E-1012106No hitNo description
Gene3DG3DSA:2.40.330.103.4E-1212107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-1212106IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.4E-1213108IPR003340B3 DNA binding domain
PROSITE profilePS508639.67114108IPR003340B3 DNA binding domain
PfamPF023629.0E-925107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MSRIEEVLSK CSFSKSLSPG KNWKSKSMRI IPEEFLRSTS ETIEHMVVFS VRWNSSWQLW  60
LQPDKEGLFM IEEDWEEFLD DNLLGPADIL VFIYQYTMFF EVRIFNKVGK EILLPPLKVE  120
PETEPVHPDP TPASASDESE PSFGNS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676700848
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434393.19e-59PREDICTED: B3 domain-containing protein At5g25470-like
SwissprotQ680D94e-48Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLA0A3P5ZN242e-56A0A3P5ZN24_BRACM; Uncharacterized protein
STRINGBra021284.1-P6e-52(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.32e-50B3 family protein