PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011101712.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 927aa MW: 104645 Da PI: 8.7505 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.1 | 6.2e-08 | 214 | 234 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+fa+ G C++G+ C+F H+ XP_011101712.1 214 VCRDFAA-GSCRRGSHCRFLHP 234 6******.*************9 PP | |||||||
2 | zf-CCCH | 17.5 | 7.4e-06 | 298 | 318 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C++f+r G C+ d+C+F+H XP_011101712.1 298 PPCKDFMR-GKCRWEDTCRFSH 318 79******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 16.192 | 209 | 236 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-6 | 210 | 235 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-5 | 213 | 234 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-5 | 214 | 234 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.53 | 294 | 321 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.014 | 294 | 320 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 299 | 319 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.573 | 346 | 372 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.014 | 346 | 371 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 927 aa Download sequence Send to blast |
MAERRKRRSL WDMEEETKHL SGVSEHNSWT AKDHHSSHGS GRYYEYSDSR TAITENSRDD 60 SRWPPWEAIE ENPVAPMNGS FKNTPEGKEM GHQRERYYKK MSPGFDRIEL HNYNHTREYD 120 RSHSQRYPGR GRGRSQSRSR TRGRSRSRSL SRDRGRERGR GRGWSRSRSR SRSRSRNDIN 180 AKDHTRSRSP VGDYRRQSYG WNDRRSGPEK SSQVCRDFAA GSCRRGSHCR FLHPDSRSLR 240 DGDFVEDDMA GSWRSRGDYS RIPRHSYSRG SALELQNDVS DPYHGEDDQF PSKSRTAPPC 300 KDFMRGKCRW EDTCRFSHHA ASDDGFRQGT RNPSFDKDID RRQPYKNGKP LCKYFVAGKC 360 DRDNCRFSHE DQNNNLEGRQ SEVTESCNSH DKSNWWNGPK WDDATRISDR PKPTGWVETN 420 VTNTTGTVDT GNGQNDERGG YSLQNENKTW GVVECKSGSL NCEKQPSLPR ECGSYGVDTG 480 ATESVGNDNM HNKRKHLVLH GSQLQNQDGI ADVRGQNALP ESQIFSIKAL EQNVHPASHI 540 QQPHCGAIEN NLSGVIDEVK DTRYTTHPIL FSGQSLNQDG GSMFPGHSSI LTEDHRVQNV 600 LCPNPSNGFS VDLNRPEIHI VDLLNAQTQM QNNQKAVHSQ GLLEAKVPQL LTNLLTSEHP 660 AQVTNSLVSN LGRQVSPVTD PVSLTQRLAN EDSQTYEDME VSGSKAMVPP FSDSTGRAPF 720 VNSINVQHNQ NAAALSLLNS MGNGRDDTEH SNHNLAQVTE ERNQMRLEPS SPLPVVTEFD 780 SSKVKHPGSP RLKQEEVVAN SEVTGGNKTI GEESKGVQEN KHSETLGGHG KVEEGNANKD 840 EKGMRIFKNA LVELVKEILK PTWKEGRMSR EVHKTVVKKV VDKVSSTIQV DHIPKTQDKA 900 EQYLSNSKPK ISKLVQAYVE RCRKADS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 175 | RSRSRSRSRSR |
2 | 167 | 175 | RSRSRSRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011101712.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020547389.1 | 0.0 | zinc finger CCCH domain-containing protein 55 | ||||
Refseq | XP_020547390.1 | 0.0 | zinc finger CCCH domain-containing protein 55 | ||||
Refseq | XP_020547391.1 | 0.0 | zinc finger CCCH domain-containing protein 55 | ||||
TrEMBL | A0A2G9H024 | 0.0 | A0A2G9H024_9LAMI; Uncharacterized protein | ||||
STRING | Migut.C01037.1.p | 1e-125 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 5e-12 | C3H family protein |