PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011101504.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 538aa    MW: 59494.2 Da    PI: 4.818
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011101504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-341142052102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d++l+ +isw ++gnsfvv+d+ ef++ +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++         weF+++ F +g+++ll++
  XP_011101504.1 114 FLSKTFDLVDDPSLDATISWGAKGNSFVVWDPLEFSRMILPRNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEGFIRGQRHLLKN 199
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_011101504.1 200 IQRRKA 205
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.8E-57110203IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-34110203IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-36111203IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.4E-17114137IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.9E-30114203IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-17152164IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340153177IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-17165177IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MDSDDSGNQY PQPPPPRPPF SFGGEPEATP IRPPSPYTTV PPTPPSFALS LSTASPFPEP  60
RPLSPFISFD SFETRFESKA VLGNEPGSAA AAGESLMGIP QPLESLYETP IPPFLSKTFD  120
LVDDPSLDAT ISWGAKGNSF VVWDPLEFSR MILPRNFKHN NFSSFVRQLN TYGFRKIDTD  180
KWEFANEGFI RGQRHLLKNI QRRKAPHSQQ IGSSSGSSNE AAKAAMEGEI ELLRKERSSM  240
MQEVVELQHQ QRGTFQHMEM VNAKLQAAEK RQKQMVSFLG KIFQNPSFLA RLQETGEQKG  300
ITSPRATRKF VKHQAHEAGS SGSPKGQIVR YRHEFGSSHT MPFAPLDSVP VTGKQLDIHT  360
SQDTGDNPDF GTENLHFQVE DIAQDELAML HDFISTPEQA EPVPTLATID PHLKGKGIVD  420
PQPVSMPEYF VSFPEDLMKE KSGHELSISG IEGMVMEDSF WGTGFGASAG MSSSTTELWS  480
TINSFDEPEL GALSDVWDIG SLRPAESSGI GIRPDEESPS IENQDTQHRD DSSNKRDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-2511120317120Heat shock factor protein 1
5d5u_B3e-2511120326129Heat shock factor protein 1
5d5v_B3e-2511120326129Heat shock factor protein 1
5d5v_D3e-2511120326129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011101504.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101504.10.0heat stress transcription factor A-3-like
TrEMBLA0A4D8YP321e-174A0A4D8YP32_SALSN; Heat shock transcription factor, other eukaryote
STRINGEMJ040671e-154(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87272025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.16e-95heat shock transcription factor A3