PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011101447.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 427aa    MW: 48228.7 Da    PI: 4.8615
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011101447.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.1e-35151062102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+ye+++d++ ++++sws+n++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ +ll++
  XP_011101447.1  15 FLAKTYEMVDDPSSDSVVSWSQNNRSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEDFVRGQPHLLKN 100
                     9***************************************************************9998.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_011101447.1 101 IHRRKP 106
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.67E-3610104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.7E-3911104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.8E-6311104IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.3E-3215104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MMDEAPCSSN SLPPFLAKTY EMVDDPSSDS VVSWSQNNRS FIVWNPPEFS RDLLPRFFKH  60
NNFSSFIRQL NTYGFRKVDP EQWEFANEDF VRGQPHLLKN IHRRKPVHSH STPNLASLPA  120
LTEFERKGYK DDIEKLKSDK ESLQAELQRH KEEQQGLKVQ MKALTERVQN VEHRHANMLS  180
SLAKTVHQPS ISLDLMPQVE VHDRKRRFPG NSYLGDETST EDNQRAASQI TTIEDLDANL  240
LLTLNKELLE QLESSLTFWE KIAFEIGEGL VQPPNSSLEL VESTSCAPSP SMCCAQLNID  300
VGSKASGVDM NSDPKTAPLD VGSKTSGIDV NCEPITALAP EVQSPPEEQA VATGNNVRTG  360
VNDVFWEQFL TENPGVNESS EFQSERKDSQ DKKNENIPGD HGIYWWNMRR VNNLAEQLGH  420
LTPAERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-231010424129Heat shock factor protein 1
5d5v_B4e-231010424129Heat shock factor protein 1
5d5v_D4e-231010424129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011101447.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101446.10.0heat stress transcription factor A-4a
RefseqXP_011101447.10.0heat stress transcription factor A-4a
TrEMBLA0A2G9HV990.0A0A2G9HV99_9LAMI; Uncharacterized protein
STRINGMigut.M00999.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-112heat shock transcription factor A4A