PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011101446.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | HSF | ||||||||
Protein Properties | Length: 427aa MW: 48228.7 Da PI: 4.8615 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.8 | 1.1e-35 | 15 | 106 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+ye+++d++ ++++sws+n++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+ weF+++ F +g+ +ll++ XP_011101446.1 15 FLAKTYEMVDDPSSDSVVSWSQNNRSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEDFVRGQPHLLKN 100 9***************************************************************9998.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_011101446.1 101 IHRRKP 106 ***985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.67E-36 | 10 | 104 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.7E-39 | 11 | 104 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.8E-63 | 11 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 6.3E-32 | 15 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 15 | 38 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 53 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 54 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MMDEAPCSSN SLPPFLAKTY EMVDDPSSDS VVSWSQNNRS FIVWNPPEFS RDLLPRFFKH 60 NNFSSFIRQL NTYGFRKVDP EQWEFANEDF VRGQPHLLKN IHRRKPVHSH STPNLASLPA 120 LTEFERKGYK DDIEKLKSDK ESLQAELQRH KEEQQGLKVQ MKALTERVQN VEHRHANMLS 180 SLAKTVHQPS ISLDLMPQVE VHDRKRRFPG NSYLGDETST EDNQRAASQI TTIEDLDANL 240 LLTLNKELLE QLESSLTFWE KIAFEIGEGL VQPPNSSLEL VESTSCAPSP SMCCAQLNID 300 VGSKASGVDM NSDPKTAPLD VGSKTSGIDV NCEPITALAP EVQSPPEEQA VATGNNVRTG 360 VNDVFWEQFL TENPGVNESS EFQSERKDSQ DKKNENIPGD HGIYWWNMRR VNNLAEQLGH 420 LTPAERT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-23 | 10 | 104 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-23 | 10 | 104 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-23 | 10 | 104 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00443 | DAP | Transfer from AT4G18880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011101446.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101446.1 | 0.0 | heat stress transcription factor A-4a | ||||
Refseq | XP_011101447.1 | 0.0 | heat stress transcription factor A-4a | ||||
TrEMBL | A0A2G9HV99 | 0.0 | A0A2G9HV99_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M00999.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3448 | 23 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 1e-112 | heat shock transcription factor A4A |