PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011101442.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 347aa    MW: 40062.7 Da    PI: 4.6787
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011101442.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.62.9e-31431352103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k++ +++d+e++++isw+++g+ f+++d+++f+ ++Lp+ Fk snf+SFv QLn YgF+k++ ++          e+++++F++gkk+ll++
  XP_011101442.1  43 FLWKTFAMVDDQETNSIISWNSTGTGFIIWDQNKFTAEILPRLFKSSNFSSFVYQLNNYGFRKISWDR---------YEYANEWFQAGKKHLLKN 128
                     99****************************************************************99.........78**************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikr++++
  XP_011101442.1 129 IKRRNKQ 135
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-4239132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.21E-2940132IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-3240132IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-144366IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.8E-2743132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-148193IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-1494106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDFETAQMVK KSETENAGSG DGEDVVVCDP GSGKQLEPRT PPFLWKTFAM VDDQETNSII  60
SWNSTGTGFI IWDQNKFTAE ILPRLFKSSN FSSFVYQLNN YGFRKISWDR YEYANEWFQA  120
GKKHLLKNIK RRNKQSEVTN KRGRLTPDHD STTAAIETKL DAMVTEQNDM KWKIQKLRES  180
LDNMEDQLTS LKTTTILQEF EDEKMEIAVF LKQFMQYLRE MKDEASGDNS KRPRVHTPPT  240
TERKVELSDN VDISTEKLVT SVDDSGSSTR DNKVNNTREN AEHCQFWKNM LEEDAGLDQG  300
DLAAHHSKAI MELDEMMASN IEIQREFLIP KPYDPDMEDA GHLELWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-20181324129Heat shock factor protein 1
5d5v_B9e-20181324129Heat shock factor protein 1
5d5v_D9e-20181324129Heat shock factor protein 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131LKNIKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011101442.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101442.10.0heat stress transcription factor A-7a-like isoform X1
TrEMBLA0A2G9HVA41e-138A0A2G9HVA4_9LAMI; Heat shock transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129701518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.12e-39heat shock transcription factor A9