PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011101021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 165aa MW: 17960.3 Da PI: 6.882 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.2 | 2.8e-20 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i++ks+r++tf+kRr g++KKAeEL+ LC+ +avi fs+ g+++ + XP_011101021.1 9 KPIQDKSKRHTTFTKRRSGLFKKAEELCGLCGGAAAVITFSKAGNVFGF 57 68******************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-22 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-22 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.077 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-15 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.4E-19 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-15 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-15 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MVRRRVEIKP IQDKSKRHTT FTKRRSGLFK KAEELCGLCG GAAAVITFSK AGNVFGFGHP 60 SVEHVVSRYL ADPNSTLVTE DEDSHVETCL HASGGGTEKK EVKAPPLTET ETRIAEALAN 120 HRPAWDVMVR NLALSELHEL EASVREIKST VEARAAEAEA EAAGI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011101021.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101021.1 | 1e-118 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2G9HGU9 | 7e-42 | A0A2G9HGU9_9LAMI; MADS box transcription factor | ||||
STRING | Migut.E01244.1.p | 4e-41 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 5e-22 | AGAMOUS-like 61 |