PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100571.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family FAR1
Protein Properties Length: 691aa    MW: 79738.2 Da    PI: 7.4597
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100571.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.91.9e-2472163190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     ++Yn++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke      +w+++++++ HnHel 
  XP_011100571.1  72 EYYNNFARKNGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVPQWYISQFSNVHNHELL 163
                     69********************8888.*******************************************98755568*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-2272163IPR004330FAR1 DNA binding domain
PfamPF105515.2E-21295387IPR018289MULE transposase domain
PROSITE profilePS509669.767568603IPR007527Zinc finger, SWIM-type
PfamPF044347.2E-7572600IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-4578605IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MAVKPLHNIW IRRQQCPCGD WKCYIKYDGD DQSTVASQSV KSELSSSSPL SQEVIFTPYV  60
GQIFKSDDEA FEYYNNFARK NGFSIRKARS TESQNLGVYR RDFVCYRSGF NQPRKKANVE  120
HPRDRKSVRC GCDAKLYLTK EIVDGVPQWY ISQFSNVHNH ELLEDDQVRL LPAYRKIEEA  180
DQERILLLSR AGFPVNRIVK VLELEKGVQP GNLPFIEKDV RNFVRSCKKT VQENDTVLTM  240
KRDNDMLELL EACKAAAARD EGFVYNFTTD GNGKVENIAW TYGDAIRAFS LFGDVVTIDT  300
SYRSITYGMI LGMWFGIDNH GQPIFFGCTL LQDETPKSFS WALQVFVRFM RGRHPQVVVT  360
DMDSGLRDAL AIEMPNTKQI ICIWKVLSKM SSWFSVQLGM QYSRFKSEFD MLCHLENVED  420
FEHQWNHLVA QFGIGSDKHL SLLFSYRTSW PFCYTRNFFL ARAMTPEYSK LVETFLKNIL  480
SPQSSLKCFF KQQVGTAASF GSENRKELLY LPIKTCLPLE EHARTVLTPF AFSALQQEIV  540
LSLQCATTEM ANGSYLVRHY KKMERECLVI WIPDDEQLHC SCKEFEHSGI LCRHSLRVLV  600
VKNYFQIPEK YFLLRWRMES SLIPLDDQII ANGNNECSQA FHSLTATLLS ESFISKERFD  660
FVHGQLTTLL EHVQNMPVSD RSISPNNIVK S
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100571.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100571.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_020555042.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_020555043.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A2G9GDU30.0A0A2G9GDU3_9LAMI; Uncharacterized protein
STRINGXP_009776059.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]