PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100154.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | WOX | ||||||||
Protein Properties | Length: 284aa MW: 31881 Da PI: 6.9619 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63 | 4.4e-20 | 32 | 93 | 2 | 57 |
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L++l+++ r p+ae+++++++kl +++ ++V++WFqN++a+e++ XP_011100154.1 32 STRWTPTTDQIRILKDLYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 93 58*****************8678*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.3 | 6e-37 | 31 | 95 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ XP_011100154.1 31 SSTRWTPTTDQIRILKDLYYnNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 95 789***************9779*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-11 | 25 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.527 | 28 | 94 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.4E-6 | 30 | 98 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-17 | 33 | 93 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.72E-7 | 33 | 95 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-7 | 33 | 93 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0080166 | Biological Process | stomium development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MEPHQQAQQQ QQQANDQEGG GKSSSFLCRQ SSTRWTPTTD QIRILKDLYY NNGVRSPTAE 60 QIQRISAKLR QYGKIEGKNV FYWFQNHKAR ERQKKRFTAD IPMHRSNATS HWKNEPDHQF 120 LSPIYNKLSN ITAPPPPGNN FPSSSASSAA GLLSVGNYGY GSVAMEKSFR ECSITPSSNG 180 GGQNFAWIGV DPYSSAYPFL EKRKYASNNA HQTLELEEEE DDDAPPEIET LPLFPMHGDA 240 IKQENDYYNG WRHRSDEDGA TAGGARASLE LSLNSYAARF PTPP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00265 | DAP | Transfer from AT2G17950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011100154.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY162209 | 9e-68 | AY162209.1 Antirrhinum majus ROSULATA (ROA) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100154.1 | 0.0 | protein WUSCHEL | ||||
Swissprot | Q6YBV1 | 4e-94 | WUS_ANTMA; Protein WUSCHEL | ||||
TrEMBL | A0A2G9GV80 | 1e-125 | A0A2G9GV80_9LAMI; Uncharacterized protein | ||||
STRING | XP_009792214.1 | 2e-91 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7604 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 4e-43 | WOX family protein |