PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100052.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 306aa    MW: 36072.8 Da    PI: 5.7525
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100052.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.2e-16794194
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                    ffkv       +++ l +p  f+++    k+ + ++ l+d+++++W vk+   + ++  ++++GW +Fv++n L +gD++vF++  +s f+ ++
  XP_011100052.1  7 FFKVY--IAEINNNDLKIPQAFVQRVR--KAFPEKVYLRDRWNNVWPVKV--AQVGDDWYIRDGWVKFVDDNFLTSGDILVFEYFCDSLFNVKL 94
                    56666..55677888********9997..558889***************..77777888************************9988884444 PP
2B332.91.1e-102162911290
                     HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     ++g l +p + + ++ +++   ++++tl d++gr++  k++ +k +++ v ++GW++ ++ n +++ D ++ ++++ +++
  XP_011100052.1 216 RKGDLFIPMDII-KYsNLD--FTQDMTLVDPKGRKFHAKCKKWKDGRM-VVAGGWRSLCRLNFVEQEDRCICEFVQGEGR 291
                     567799999999.554777..5568***************99998766.6677********************8854333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-19496IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.844598IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-19697IPR015300DNA-binding pseudobarrel domain
PfamPF023626.6E-14791IPR003340B3 DNA binding domain
SMARTSM010192.9E-10798IPR003340B3 DNA binding domain
CDDcd100171.00E-11795No hitNo description
Gene3DG3DSA:2.40.330.101.4E-13202294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-16202288IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.825205303IPR003340B3 DNA binding domain
CDDcd100171.41E-8206291No hitNo description
SMARTSM010194.0E-5208303IPR003340B3 DNA binding domain
PfamPF023626.9E-10215291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKRPAAFFKV YIAEINNNDL KIPQAFVQRV RKAFPEKVYL RDRWNNVWPV KVAQVGDDWY  60
IRDGWVKFVD DNFLTSGDIL VFEYFCDSLF NVKLYGLSAT EKNVSRPLIL TDGDEQEQDS  120
EEETESEDHD YIFRRRERDN YEDDEETEDG NCRLVHQEHR HEVREQVNHT DVGGPNRNKA  180
GQWINFSGKY GMEIFQAGLL EQPTNPYFVT KIMPKRKGDL FIPMDIIKYS NLDFTQDMTL  240
VDPKGRKFHA KCKKWKDGRM VVAGGWRSLC RLNFVEQEDR CICEFVQGEG RCLLLNVTFV  300
RARDLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100052.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554938.10.0putative B3 domain-containing protein At5g66980
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-18B3 family protein