PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099949.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 565aa    MW: 61313.2 Da    PI: 4.8348
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099949.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.36.2e-13121456018374
            GRAS  18 elaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeerv 112
                      la+al++++  la ++  +m+++a+yf+eALa+++++        + p+++ e++ s++l++   f+e+ P+lkf+h+taNqaIlea++g++rv
  XP_011099949.1 214 XLADALVKHVGLLAVSQVGAMRKVATYFAEALARKIYK--------IYPQDSLESSYSDVLQM--HFYETAPYLKFAHFTANQAILEAFAGATRV 298
                     47999********************************9........44555555556666555..4***************************** PP

            GRAS 113 HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVn 205
                     H+iDf+++qG+QWpaL+qaLa R++gpp +R+Tg+g+p+++++++l+e+g++La++Ae++gv+fef+ +va++l+dl+ ++L+++p   E++aVn
  XP_011099949.1 299 HVIDFSLKQGMQWPALMQALALRAGGPPAFRLTGIGPPQPDNTDALQEVGWKLAQLAETIGVEFEFRGFVANSLADLDANMLDIRPsnVETVAVN 393
                     **************************************************************************************999****** PP

            GRAS 206 lvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvva 299
                     +v++lhrll++++++++    vL+ +k ++Pk+v+vveqea+hn+  Fl+rf eal+yys++fdsl +++l ++++++ ++ +++lgr+i++vva
  XP_011099949.1 394 SVFELHRLLARPGAINK----VLNSIKAMNPKIVTVVEQEANHNGDVFLDRFNEALHYYSTMFDSLeSSGLTPANSHDLVMTEVYLGRQICDVVA 484
                     ***************99....*********************************************8888999********************** PP

            GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       g er+erhetl++Wr+r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  XP_011099949.1 485 YDGPERVERHETLAQWRSRMHSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLITTSAWR 560
                     ***************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120415.6E-3439105IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011293.8E-3339112No hitNo description
PROSITE profilePS5098560.073166539IPR005202Transcription factor GRAS
PfamPF035142.2E-128214560IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MKRDRDRGKA EAAVSGGATS VGKAKMLAEQ QQQPDAGMDE LFAVLGYKVK SSDMADVAEK  60
LEQLEMAMGT TMEDGVSVLS TDTVHYNPSD LSGWVESMLS ELSNSCSFEG MIPSQIGISG  120
ESSCSRPGQQ DGGKIIYDDD LRAIPGGAIF SNNLKDVVGD SENGNKRMRA SAGSEFLENG  180
SPMAMAAEAA RPVVLVDSQE TGVRLVHTLI ACAXLADALV KHVGLLAVSQ VGAMRKVATY  240
FAEALARKIY KIYPQDSLES SYSDVLQMHF YETAPYLKFA HFTANQAILE AFAGATRVHV  300
IDFSLKQGMQ WPALMQALAL RAGGPPAFRL TGIGPPQPDN TDALQEVGWK LAQLAETIGV  360
EFEFRGFVAN SLADLDANML DIRPSNVETV AVNSVFELHR LLARPGAINK VLNSIKAMNP  420
KIVTVVEQEA NHNGDVFLDR FNEALHYYST MFDSLESSGL TPANSHDLVM TEVYLGRQIC  480
DVVAYDGPER VERHETLAQW RSRMHSAGFD PVHLGSNAFK QASMLLALFA GGDGYRVEEN  540
DGCLMLGWHT RPLITTSAWR LAAAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6221655937377Protein SCARECROW
5b3h_D2e-6221655937377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099949.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0578574e-56KJ057857.1 Sesamum indicum clone TilSSR_29058 microsatellite Sesame_29058 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099949.10.0LOW QUALITY PROTEIN: DELLA protein GAI
SwissprotQ7Y1B60.0GAI_SOLLC; DELLA protein GAI
TrEMBLA0A2G9FYE20.0A0A2G9FYE2_9LAMI; Uncharacterized protein
STRINGMigut.K00894.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]