PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099725.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 196aa    MW: 23202.6 Da    PI: 4.1662
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099725.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.32.5e-3581291128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGf+F+Ptdeel+v++L++++++ ++   ++i+++diy ++Pw+L++k+ ++++ewyfFs+         r+nr+t++g+Wk+ g +++++++
  XP_011099725.1   8 LPPGFEFDPTDEELIVYFLCRRAASIPCYP-NIIPDLDIYAADPWELNEKAFSSKREWYFFSRW--------RQNRSTRRGFWKEIGLNEPIFTS 93 
                     79*************************887.89**************977778899*****985........78999****************** PP

             NAM  96 kgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                     +g++vg+k+ Lvfy   + ++ + ++t+W m+ey+l
  XP_011099725.1  94 NGNEVGIKNYLVFYgdhDHEDGSKVQTNWAMEEYHL 129
                     **************654344555579********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-455150IPR003441NAC domain
PROSITE profilePS5100541.6888152IPR003441NAC domain
PfamPF023653.1E-219129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGDQKLVLPP GFEFDPTDEE LIVYFLCRRA ASIPCYPNII PDLDIYAADP WELNEKAFSS  60
KREWYFFSRW RQNRSTRRGF WKEIGLNEPI FTSNGNEVGI KNYLVFYGDH DHEDGSKVQT  120
NWAMEEYHLL KPNSQVQDDI NDEWVLCRVH EENIVDSQDR DYFRRSSNVS DGVELSYLDE  180
IYCSMDDEQD EITFPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-35515314166NO APICAL MERISTEM PROTEIN
1ut4_B3e-35515314166NO APICAL MERISTEM PROTEIN
1ut7_A3e-35515314166NO APICAL MERISTEM PROTEIN
1ut7_B3e-35515314166NO APICAL MERISTEM PROTEIN
3swm_A3e-35515317169NAC domain-containing protein 19
3swm_B3e-35515317169NAC domain-containing protein 19
3swm_C3e-35515317169NAC domain-containing protein 19
3swm_D3e-35515317169NAC domain-containing protein 19
3swp_A3e-35515317169NAC domain-containing protein 19
3swp_B3e-35515317169NAC domain-containing protein 19
3swp_C3e-35515317169NAC domain-containing protein 19
3swp_D3e-35515317169NAC domain-containing protein 19
4dul_A3e-35515314166NAC domain-containing protein 19
4dul_B3e-35515314166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099725.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099725.11e-145NAC domain-containing protein 104
TrEMBLA0A2G9FZB52e-87A0A2G9FZB5_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137851215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-52xylem NAC domain 1