PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011099626.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 353aa MW: 38799.2 Da PI: 9.6924 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106.3 | 1.8e-33 | 140 | 196 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++rY+eClkNhAa++Ggh+vDGCgEfmps geegt+++l+CaAC+CHRnFHR+ev+ e XP_011099626.1 140 NIRYRECLKNHAAAMGGHVVDGCGEFMPS-GEEGTPESLRCAACDCHRNFHRKEVDGE 196 689*************************9.999*********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 9.0E-23 | 139 | 195 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.2E-31 | 141 | 193 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.7E-32 | 142 | 193 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.91 | 143 | 192 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.49E-20 | 280 | 350 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-30 | 281 | 351 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.762 | 287 | 351 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 4.1E-28 | 289 | 346 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MERRGQERDV GIPNSMGYTP PQMIQESPVK LPLAPILSTP PDRRANAMVS TRRGSSIFSP 60 TQTLDHHYNP PPPPQQHRQL SPPPPPPQQQ QPVVQKDHSP DPDPPPTTTP TTGGASNSKK 120 PTQPQAPPPV QGSAPSAAGN IRYRECLKNH AAAMGGHVVD GCGEFMPSGE EGTPESLRCA 180 ACDCHRNFHR KEVDGEQSHY YTYNPNTGNK NSHRNPILHG QTPSSAPPHH KHSLSYSQGF 240 TTGPTPPTMV NFGGNSGGAA AESSSEDLNM FQSGSGVHAT GQTSFSGSKK RFRTKFSQEQ 300 KDRMHEFATK LGWRIQKQDE KEVQEFCSEV GVKRQVFKVW MHNNKQAMKK RQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-21 | 288 | 347 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011099626.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099626.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A2G9I8I6 | 1e-129 | A0A2G9I8I6_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H00983.1.p | 1e-117 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 2e-61 | homeobox protein 33 |