PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099420.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HD-ZIP
Protein Properties Length: 269aa    MW: 29917.8 Da    PI: 7.9825
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099420.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-18121175256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k q   Lee F+++++++ +++++LA++l+L  rqV vWFqNrRa+ k
  XP_011099420.1 121 RKKLRLSKAQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 175
                     677889***********************************************98 PP
2HD-ZIP_I/II120.96.7e-39121208188
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                     +kk+rlsk q++lLEesF+++++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +e +
  XP_011099420.1 121 RKKLRLSKAQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLQKELQEPK 208
                     69*********************************************************************************99855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-18111178IPR009057Homeodomain-like
PROSITE profilePS5007117.459117177IPR001356Homeobox domain
SMARTSM003891.2E-15119181IPR001356Homeobox domain
PfamPF000463.7E-16121175IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-17121175IPR009057Homeodomain-like
CDDcd000861.22E-16121178No hitNo description
PROSITE patternPS000270152175IPR017970Homeobox, conserved site
PfamPF021831.2E-8177209IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.3E-23177220IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGSDDLCNTG LVLGLGFSST GEKSKKPAAA HRPDKILEPS LTLSLSGEPY DLQVKKMDSD  60
NNKGGLSCDH QSVDLYRQDS AASSFSNVSV KREREIGSEE VEIERVSSRV SDEDEDGSNG  120
RKKLRLSKAQ SALLEESFKQ HSTLNPKQKQ DLARELNLRP RQVEVWFQNR RARTKLKQTE  180
VDCEFLKKCC ETLTEENRRL QKELQEPKAL KLTQPLYMQL PAATLTMCPS CERIGGGGGV  240
VPENAAKSPY VMAPKPHFYN PFTNPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169177RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0657292e-56KJ065729.1 Sesamum indicum clone TilSSR_36930 microsatellite Sesame_36930 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099420.10.0homeobox-leucine zipper protein HAT22-like
SwissprotP466043e-98HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2G9GQ011e-155A0A2G9GQ01_9LAMI; Transcription factor HEX
STRINGVIT_00s0732g00010.t011e-135(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-92HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]