PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099307.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 308aa    MW: 35748.1 Da    PI: 10.3243
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099307.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.5e-1671155394
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     k+l    v  ++rl++p  f +++g+    +  ++l+++sg+ W vkl     ++ry +t+GW++F+++ gL++g+f+vF+++g+s f   v
  XP_011099307.1  71 KIL---IVDFTRRLRVPPVFSQRYGSA--LGGSVRLRNSSGKIWFVKLEQMDEDERYCFTQGWNKFAEEVGLEVGEFLVFRFVGESMFD--V 155
                     555...3445568***********866..5567***************99999999**************************9987773..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-2464168IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-2164162IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.91666161IPR003340B3 DNA binding domain
CDDcd100172.55E-1767158No hitNo description
SMARTSM010195.2E-1269161IPR003340B3 DNA binding domain
PfamPF023621.2E-1377154IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-6212300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-7214299IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.78220307IPR003340B3 DNA binding domain
PROSITE profilePS508637.599275308IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVTGTIRIPS IAKFVQQNFD SSEALAKHLT PVKFTERDSL YLTPAILCFR TRPQKKKKMS  60
LKPNQRPSFF KILIVDFTRR LRVPPVFSQR YGSALGGSVR LRNSSGKIWF VKLEQMDEDE  120
RYCFTQGWNK FAEEVGLEVG EFLVFRFVGE SMFDVSVYGV HGCDREIPGA GFQVEDFDPD  180
EQVELREDVP NVIKKKQSRA GNARTSESDH SQEEKSPLYF EILLKFHHRS RVSPPKKFWM  240
AAGLSVRRTV GVVYLPKHHY QIVKLDHRPK YRIDITSGWS EFRKANGLVF GKTYSFEFKK  300
IDNHKKVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099307.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099307.10.0B3 domain-containing protein Os08g0324300-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.18e-11B3 family protein