PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099238.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family B3
Protein Properties Length: 265aa    MW: 30842.3 Da    PI: 9.8795
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543e-171196191
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                    ffk+l     +++ rl+lp  f e++g+  ++   ++l+++sg+ W vkl  +  ++ry +t+GW++F+++ gL+ g+f+vF+++g s f 
  XP_011099238.1 11 FFKIL--ITDFTR-RLRLPLVFSERYGSALRG--SVRLRTSSGKIWFVKLEQKDEKERYCFTGGWNKFAEDVGLEMGEFLVFRFVGGSMFD 96
                    66777..445555.6***********877545..6***************98999999*************************99877773 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-226104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-246110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.4658103IPR003340B3 DNA binding domain
CDDcd100172.11E-189100No hitNo description
SMARTSM010191.1E-1311103IPR003340B3 DNA binding domain
PfamPF023621.7E-141195IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-8159243IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.12160256IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-9162244IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.13163256IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSVKPNQRPS FFKILITDFT RRLRLPLVFS ERYGSALRGS VRLRTSSGKI WFVKLEQKDE  60
KERYCFTGGW NKFAEDVGLE MGEFLVFRFV GGSMFDVSVY GVHGCEREIP GAGFQVEDSD  120
LDEQIELSKD DVPNVIKKKR SRAGNTRTSE SDRPLEETTP LYLEIRLKPH HKSRVSLPKR  180
FCMAADLPGK QTVELEYLPK HRCQVIMLDR RHRSRTEMAF GWSEFRKSNG LVYGKTYSFE  240
FKPSRNIIEV QELKTLNYRP ENSHS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099238.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099238.10.0putative B3 domain-containing protein At5g66980
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-17B3 family protein