PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098722.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 607aa    MW: 66702.2 Da    PI: 5.9874
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098722.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002931123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C+ks+ +  +L  H+r+H
  XP_011098722.1  9 YVCKICSKSCVSGKSLGGHMRVH 31
                    9********************99 PP
2zf-C2H217.31.3e-05127147323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ Cgk F++   L  H+r+H
  XP_011098722.1 127 CKECGKEFPSLRALSGHMRSH 147
                     ********************9 PP
3zf-C2H213.90.00016155177123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cgk F +   +  H++tH
  XP_011098722.1 155 HQCKECGKGFDSMRAMFGHMKTH 177
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.7E-6832IPR007087Zinc finger, C2H2
SMARTSM003550.011931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.907125152IPR007087Zinc finger, C2H2
SMARTSM003550.0068125147IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.16E-10126177No hitNo description
PfamPF139127.6E-8127148IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-4127144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.601.4E-4145179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.5E-6155179IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.219155182IPR007087Zinc finger, C2H2
SMARTSM003550.0011155177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
PfamPF139124.1E-11523546IPR007087Zinc finger, C2H2
SMARTSM003550.19523545IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954523545IPR007087Zinc finger, C2H2
PROSITE patternPS000280525545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MGEVQGQRYV CKICSKSCVS GKSLGGHMRV HLALISASKK AAKKRAEIKV EFEGGEDDDD  60
GSFQLKKSSK NQSNSALPDE EQIKNCDGAM DLGDGDQNSS YELRENPKKS WRISDSKTGV  120
SKIRAACKEC GKEFPSLRAL SGHMRSHSIK NRKLHQCKEC GKGFDSMRAM FGHMKTHSKR  180
SRVPDESADS LSELENLCPI RRKRSRIGYK STSNPSLSSL NASTSAVSEA GEVEEVAKCL  240
MMLSRGVKVW RKSDLVAESS DDDSVYFGAE SSCKREKFYE NDGDFGCDGA KKMKMSLSTG  300
KLDYCVPCST NAFAERNVSE FDDLDSRWSA EDEMKVDFEV SDETKVDLKV SDDGKPSVHK  360
LVKLEDLNEF AVGLEYAGDS RSSDSTRFAE SHNDLLGAAG MNGAGSEFFK FDSSKKGSSS  420
VDQSGLSKYC SENEADDLET LKDFVEKRRT CDKFFHPLCE LGGHSARHKL QGNSSSMPKT  480
PSLLSITVAD SKLDQLECSD NQLEQESAST GIVSLESSKS KEHECPICFK VFPSGQALGG  540
HKRAHCTGSN ESKTNETTTV NQEVAEVRDL LDLNFPVTAD EGTKSDVGLN LWWAERSHEH  600
EALVLTN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011098722.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554652.10.0uncharacterized protein LOC105177311
TrEMBLA0A2G9GNP30.0A0A2G9GNP3_9LAMI; Uncharacterized protein
STRINGMigut.H00643.1.p9e-81(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.17e-16C2H2-like zinc finger protein