PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011098324.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 262aa MW: 29864.6 Da PI: 6.8622

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011098324.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.9	1.7e-28	89	176	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+Y+++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p XP_011098324.1 89 FYNSYSTRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKISSGKWVVTKFVKEHTHPLTP 176 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-25	89	176	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MDYEIDVDVN GEVVGSSTNF EGRTDDDDAV VGSSADGMLQ HGLGVKVDDD SSERELFRLD 60 ELHDANCSHP IDEPYVGQEF ESEAAAHAFY NSYSTRVGFV IRVSKLSRSR RDGSAIGRAL 120 VCNKEGFRMP DKREKIVRQR AETRVGCRAM ILVRKISSGK WVVTKFVKEH THPLTPGKGR 180 KDLIYDQYPN EHDKIRELSQ QLAIEKKKVA TYKRHLEMIF EHIEEHNQSL AKKIQNIVNS 240 VREMESKEQL GPRTVDIFRS SQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011098324.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098324.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2G9HZ25	1e-169	A0A2G9HZ25_9LAMI; Uncharacterized protein
STRING	Migut.H01929.1.p	1e-155	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11568	23	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-102	FAR1 family protein