PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098060.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 403aa    MW: 45608.8 Da    PI: 5.0657
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35141042101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+ye+++d+ +++++sws++g+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ ++         weF++++F +g+++ll++
  XP_011098060.1  14 FLLKTYEMVDDPLTNSIVSWSHTGHSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPDQ---------WEFANEEFIRGQRHLLKN 99 
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_011098060.1 100 IHRRK 104
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.31E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.7E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.1E-3910103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.4E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDGSNGSSNS PAPFLLKTYE MVDDPLTNSI VSWSHTGHSF VVWNPPEFAR DLLPKYFKHN  60
NFSSFIRQLN TYGFRKVDPD QWEFANEEFI RGQRHLLKNI HRRKPIHSHS GQGNPVPLTD  120
SERDEFENQI EKLKQEKLLL QSEVDRYEQE NRGYEYQLRS LGQALQNIDQ RQRQLMVTLA  180
QLLQKPGYTS SIMENAESYS KKRRLLALHF LQDKANLGEN QSLTVMENLS NLSLPLLNVE  240
QVEKLDSSLT FWENFMHVID QIPSEDSHDF RLPPPPVITE MAASSGDSDL NVPPRSPGYH  300
MSVSPPHNCH SSPERAASST YVDSPAISSI CIDLDFSEKP APSGIDVNMS PNKIPDVEMP  360
KDREQDATIS SVPVGANDVF WQQFLTEAPG SSVAQEAQSQ RSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-27310319129Heat shock factor protein 1
5d5v_B4e-27310319129Heat shock factor protein 1
5d5v_D4e-27310319129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011098060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554487.10.0heat stress transcription factor A-4b
TrEMBLA0A4D9ATP70.0A0A4D9ATP7_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.H02116.1.p1e-172(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-78heat shock transcription factor A4A