PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097796.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 263aa    MW: 30090.1 Da    PI: 9.0999
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097796.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.29.4e-51261533128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                     pGfrFhPtd+elv +yL++kve++++++ e ik++diyk++PwdLpk+ + ++kewyfF+kr +ky+++ r+nr+t sg+Wkatg d++++s+  
  XP_011097796.1  26 PGFRFHPTDDELVGFYLRRKVEKRPISI-ELIKQADIYKYDPWDLPKSSNVGDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSSgg 119
                     9***************************.89***************98899*****************************************965 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  XP_011097796.1 120 eGRDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 153
                     54555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.78724184IPR003441NAC domain
SuperFamilySSF1019414.71E-5525184IPR003441NAC domain
PfamPF023651.2E-2526153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MELENVSSSM ITTADDKERD DDAPLPGFRF HPTDDELVGF YLRRKVEKRP ISIELIKQAD  60
IYKYDPWDLP KSSNVGDKEW YFFCKRGRKY RNSIRPNRVT GSGFWKATGI DRPIYSSGGE  120
GRDCIGLKKS LVYYRGSAGK GTKTDWMMHE FRLPASHDKR TKHIDIKSVA QEAEVWTLCR  180
IFKRNVSYKK CIPDWREIAA KKSTINPAVD ASSKTCTPQA PFSAASSFSG SICGDTNDLY  240
LRHTDWEDLR SIVNFVAADP FYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-492619019171NO APICAL MERISTEM PROTEIN
1ut4_B2e-492619019171NO APICAL MERISTEM PROTEIN
1ut7_A2e-492619019171NO APICAL MERISTEM PROTEIN
1ut7_B2e-492619019171NO APICAL MERISTEM PROTEIN
3swm_A2e-492619022174NAC domain-containing protein 19
3swm_B2e-492619022174NAC domain-containing protein 19
3swm_C2e-492619022174NAC domain-containing protein 19
3swm_D2e-492619022174NAC domain-containing protein 19
3swp_A2e-492619022174NAC domain-containing protein 19
3swp_B2e-492619022174NAC domain-containing protein 19
3swp_C2e-492619022174NAC domain-containing protein 19
3swp_D2e-492619022174NAC domain-containing protein 19
4dul_A2e-492619019171NAC domain-containing protein 19
4dul_B2e-492619019171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097796.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097796.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK551e-88NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A068UZ641e-137A0A068UZ64_COFCA; Uncharacterized protein
STRINGXP_009778771.11e-128(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16972469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.19e-91NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]