PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097689.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 427aa    MW: 47393.6 Da    PI: 10.3165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-051333323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C  C+k+Fs+   L  H+r H
  XP_011097689.1 13 CRVCHKVFSSAKALGGHMRIH 33
                    *******************99 PP
2zf-C2H211.80.0007782100321
                     ETTTTEEESSHHHHHHHHH CS
         zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                     C +Cg+ F++  +L  H+r
  XP_011097689.1  82 CMICGREFPSMKSLFGHMR 100
                     99****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0671133IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5961138IPR007087Zinc finger, C2H2
SuperFamilySSF576672.79E-51236No hitNo description
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-41336IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-61333IPR007087Zinc finger, C2H2
SMARTSM003550.03680102IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.70480102IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
PfamPF139122.5E-782104IPR007087Zinc finger, C2H2
PfamPF139120.011377394IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MKDFSKINVK RDCRVCHKVF SSAKALGGHM RIHVNEVKNK DLTVSRNSTS LRAHHHSIKP  60
KKQNPREDCH KNMVGVITEP ICMICGREFP SMKSLFGHMR CHPERDWRGI RPPSTAKINS  120
SDHTSSLWDT DQDQVDVVVS TSQGNDQVVD LVESLRGWPV TARRGRKALT ADSMLGFSGP  180
SKEHDQLHKA VDYLLMLGRG SSCRNAQSHS RNMDSSEAAS SNLPVSSANP GSTSNKPKIR  240
KSSSKFRTNS PVEKSGKEKS TRSTDVLGES TKKLCGSVLN YDQLDNRDCD SAKFDNIRRK  300
RKKMKLSELE QAPKISPVTP EQQKMAAGRT ANHWCNTRQK SFSSHNRLKI IILDSIGKSS  360
NAGTSLNSVE ATQHEYCMVC NKNFPAAQAL GSHKMCGRTG APMSQHVSAS SRRVLNFDLN  420
EVPPSED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298302RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097689.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097689.10.0uncharacterized protein LOC105176548
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-17C2H2 family protein