PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011097617.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bZIP | ||||||||
Protein Properties | Length: 358aa MW: 40812.2 Da PI: 7.1292 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.4 | 2.3e-11 | 71 | 103 | 2 | 34 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeek 34 +++k+ rr+++NReAAr+sR+RKka++++Le+ XP_011097617.1 71 PADKVLRRLAQNREAARKSRLRKKAYVQQLENS 103 689****************************84 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.6E-8 | 65 | 117 | No hit | No description |
SMART | SM00338 | 6.2E-6 | 70 | 133 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.9E-8 | 72 | 102 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.657 | 72 | 114 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.13E-7 | 74 | 112 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 77 | 92 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 5.5E-27 | 160 | 235 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MNSASTQFVP SRRMGIHEPI HQMAMWGDFK GLDTSPPMIL EVEAKLDNQS EDTSHGIDGP 60 SNKYDQEASK PADKVLRRLA QNREAARKSR LRKKAYVQQL ENSKVRLIQL EQELDRARRQ 120 GLHVGGALDN SQLGYSGTTN PGIATFEMEY GRWVEEQNRQ ISDLKNALHS DIGDVELRLF 180 VESGMRHYFD LFTMKATAAR SDVFYLMSGM WKTAAERFFF WIGGFRPSEL LKVLLPHLEP 240 LSEQQRLDLC NLGQSCQQAE DALSQGMEKL HQIIAETIAA RLLGDENYYQ QIGAAYEKLD 300 ALVRFVGQAD HLRQETLQQI SRILTTRQAA RGLLALGMYF QRLRDLSSHW SSHPREST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00642 | SELEX | Transfer from LOC107771743 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011097617.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097616.1 | 0.0 | TGACG-sequence-specific DNA-binding protein TGA-1A isoform X3 | ||||
Swissprot | P14232 | 1e-173 | TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A | ||||
TrEMBL | A0A4D8ZE64 | 0.0 | A0A4D8ZE64_SALSN; Transcription factor TGA | ||||
STRING | Migut.L00088.1.p | 0.0 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 1e-162 | bZIP family protein |
Publications ? help Back to Top | |||
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