PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096379.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WOX
Protein Properties Length: 385aa    MW: 42718.8 Da    PI: 7.178
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-1758118257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     ++R+++ +eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  XP_011096379.1  58 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 118
                     89*****************99*************************************995 PP
2Wus_type_Homeobox111.83.8e-3657120265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq
     XP_011096379.1  57 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKQ 120
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.36554119IPR001356Homeobox domain
SuperFamilySSF466894.06E-1254124IPR009057Homeodomain-like
SMARTSM003899.5E-956123IPR001356Homeobox domain
CDDcd000865.65E-857120No hitNo description
Gene3DG3DSA:1.10.10.603.7E-757125IPR009057Homeodomain-like
PfamPF000463.9E-1558118IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MANSSNRHWP SMFKSKPCNT TLRQWQHDVN SPLISSGACH RTPYTSGTGC EERTPEPKPR  60
WNPRPEQIRI LEAIFNSGMV NPPRDEIRKI RAQLQEYGQV GDANVFYWFQ NRKSRSKHKQ  120
RQLQNAKSQP QQTTTSPPIT TNISTAFLTA PSSSSSSSDK SSPHNSNEKS LSVGPTTVVD  180
LLNSPTASVN QPFFQTPNEF LAEPFFFPVQ QNPGGSTSAS VAQGFCFPDV SDVPDQSATN  240
CPNLLLNELM LMSNCPSKKD EDHEKMKLQQ NLSYTETPAP NTTQPLVPPC LSIPSTNNQI  300
LQGLGEQGPA KSTVFINDVC FEVRVGPFNV REAFGDDAVL IQSSGQPVLT NEWGVTLQPL  360
QHGAFYYLLR PFTPSPDDIR TIHLM
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096379.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096377.10.0WUSCHEL-related homeobox 9
RefseqXP_011096378.10.0WUSCHEL-related homeobox 9
RefseqXP_011096381.10.0WUSCHEL-related homeobox 9
TrEMBLA0A2G9G3281e-165A0A2G9G328_9LAMI; Uncharacterized protein
TrEMBLA0A2G9HDL71e-165A0A2G9HDL7_9LAMI; Uncharacterized protein
STRINGEOY281171e-154(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45980.15e-70WUSCHEL related homeobox 8