PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011096344.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 25334.6 Da PI: 10.9189 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.3e-20 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a+++a+++++g XP_011096344.1 19 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDNAARQFRG 68 58*******.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.63 | 19 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.26E-31 | 19 | 76 | No hit | No description |
SuperFamily | SSF54171 | 2.16E-22 | 19 | 76 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-33 | 19 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-40 | 19 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-13 | 19 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-11 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-11 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MAPRVRTTAA SAGGDNEMHF RGVRKRPWGR YAAEIRDPGK KSRVWLGTFD TAEEAARAYD 60 NAARQFRGPK AKTNFPPPDS DVKKAAADGL VNNRSPSQSS SVESSSRETF PPVAVAVAVP 120 DSTLLDLTLG RRRMRFPFQN NHNQRPAAAV AASSAGGLVR IMPMQNTMLH LRPESRQEII 180 ELMNKLRRVP AEFHGGSAAQ SESDSSSAVV DLPKSPLSKG INLDLNLPPP ENL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-21 | 19 | 76 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-21 | 19 | 76 | 5 | 63 | ATERF1 |
3gcc_A | 6e-21 | 19 | 76 | 5 | 63 | ATERF1 |
5wx9_A | 2e-20 | 20 | 76 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011096344.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020553968.1 | 1e-169 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A2G9GMS7 | 1e-94 | A0A2G9GMS7_9LAMI; Uncharacterized protein | ||||
STRING | XP_009618542.1 | 6e-56 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 7e-27 | erf domain protein 9 |